Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0340 ATGAAGACGACGAAGATGATGCCTTACCAGGACAAGAGCTCAAACATGTCACCCCGTCGAGTTCGAAGCCGCCATTGGCGTCATAGCCGCACAGGCACGGCCGTGGTCGCCGTCTTGGCATTTCTCCTCTCCACCGCCGCTTGGTTGTCGCTGGTGTTCTCCGGCACCACGACTCGTTGCTGGCACCGGTTTAAGGATTGGGAAAGGAGACCCCAAGCTTTCCCGTGGGGCAGGCGTCGCCAGGATCGTTCTTCATCTATCTTGCAGCCGCCGACCACGTCACCCCCTCCCCCCTCCGTTTCCCTCCTCCCATTTCCCAGAAATGCCAGCCTTCCTTCTGCAGGGGAGGAATTGTCTCTGAGGCACATCGTCTTCGGCATAGCTGGTTCATCGCATCTCTGGAAAAGGCGGAAGGAGTTAGTGAGGCTGTGGTGGCGTCCAAACGACATGCGCGGGCACGTTTGGTTAGAAGAGCGAGTGAGTCCCGAGGAAGGAGATGATTCTTTGCCTGCCATCATGGTTTCCGAGGACATCTCCCGTTTCCGATACACCAATCCCACTGGCCACCCTTCGGGACTGCGGATCTCTCGGATTCTCTCGGAGTCCTTCCGCCTTGGACTGCCCGATGTGCGCTGGTTTGTCCTGGGCGATGATGATACCATTTTCAATGCCGATAACCTTGTTACTGTTCTCAACAAGTACGATCCATCTGAGATGGTTTACATCGGTGGCCCATCTGAGAGTCATTCTGCCAATTCCTATTTCAGTTATTCTATGGCCTTTGGCGGTGGAGGAATTGCTATAAGTCACCCACTGGCCGAGGCACTCTCCAAGATTCAAGATGGGTGTCTAGACAGATATCCAAAGCTTTATGGAAGCGATGATCGACTCCATGCCTGCATTACAGAATTGGGCGTTCCTCTGACCAGAGAGCATGGCTTTCACCAGTGGGATATTAGGGGTAACGCACATGGTCTTTTATCCTCACATCCGATTGCACCATTTGTCTCAATTCACCATGTTGAAGCGGTTGACCCTTTTTACCCCGGCTTGAGCTCTCTGGAGAGTCTCAAACGTTTTACCAGAGCCATGAAGGTTGATCCAGGGAGCTTCTTGCAGAGATCCATTTGTTATGATCACACTCGACATTTAACTTTTTCTGTCTCACTTGGTTATGTTGTTCAAGTTTTCCCACACATTGTTCTCCCCCGTGAATTGGAGCGGTCAGAGCAAACTTATTCTGCTTGGAATAGAATTAATCATAGAAATGAATTTGACTTCGACACCAGAGACCCATACAGATCTGTTTGTAAAAAGCCAATCCTCTTTTTCTTGAAAGATGTAGGAAGAGAAGGTAATGCTACTTTGGGTTCATATGAACGGGCCAGAGGAAAGGATGATTTGAAAAGGAAAGTTTTCTGTTTTCCGCAAATGCGTCCACTGCGCTATGTGCAACATATCCAGGTGTTGGGGTATCCACTGAGCAAGAATTGGCATTTGGTTCCACGTAGGCTATGTTGCAGACTAAATCAGACAAGCAGTGAACTCCTTAAATTAACTGTTGGGCAGTGTGAGAAAGGATCTTTCAGTTCTTTTAATTGA 1602 0.4956 MKTTKMMPYQDKSSNMSPRRVRSRHWRHSRTGTAVVAVLAFLLSTAAWLSLVFSGTTTRCWHRFKDWERRPQAFPWGRRRQDRSSSILQPPTTSPPPPSVSLLPFPRNASLPSAGEELSLRHIVFGIAGSSHLWKRRKELVRLWWRPNDMRGHVWLEERVSPEEGDDSLPAIMVSEDISRFRYTNPTGHPSGLRISRILSESFRLGLPDVRWFVLGDDDTIFNADNLVTVLNKYDPSEMVYIGGPSESHSANSYFSYSMAFGGGGIAISHPLAEALSKIQDGCLDRYPKLYGSDDRLHACITELGVPLTREHGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPFYPGLSSLESLKRFTRAMKVDPGSFLQRSICYDHTRHLTFSVSLGYVVQVFPHIVLPRELERSEQTYSAWNRINHRNEFDFDTRDPYRSVCKKPILFFLKDVGREGNATLGSYERARGKDDLKRKVFCFPQMRPLRYVQHIQVLGYPLSKNWHLVPRRLCCRLNQTSSELLKLTVGQCEKGSFSSFN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0340 533 Gene3D - 112 343 - -
Vvi2g0340 533 MobiDBLite consensus disorder prediction 1 26 - -
Vvi2g0340 533 MobiDBLite consensus disorder prediction 75 106 - -
Vvi2g0340 533 PANTHER FRINGE-RELATED 29 528 - -
Vvi2g0340 533 MobiDBLite consensus disorder prediction 1 16 - -
Vvi2g0340 533 FunFam Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 112 349 - -
Vvi2g0340 533 Pfam Protein of unknown function, DUF604 252 507 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0340 Vvi-Chr2 2766798 2768642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0340 29 526 Glycosyltransferase AT1G33250 70.659 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0340 - - vvi:100253017 1074.31