Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01810 ATGAAAGATTCGGAGAAAGTAACGTGCGGCGCACAGGCACGCCCCTCGGCCTCACAGAAACTTATGGTGTGGCTCATCCTCTTCATGTGCGTGACCTACATCGTGTACAGTCTGAAGCTGGTGTCCACGCCGACTTCAACCACGTGCAGTCACGCGCCTTTCTCCGTCCAACGCCTCTCGGCCCCAAACGGAACGGCGAAGCGGGAGCGGAAAACGGAGCTCCGTCACGTAGTGTTCGGAATCGCAGCGTCGGCGAAGCTGTGGGAGCAGAGAAAGAATTACATAAAGATATGGTACAAGGAGAAGGAGATGAGGGGAGTGGTGTGGTTGGACGGTAGAGTGAAAAGCGAGGCGAAGGAAGGGTTGCCACGTGTGATGATTTCGTCGGACACGTCGAACTTCGCGTACAGGAACAAGCAGGGGCACCGTTCGGCCATCCGAATATCGCGCATCGTGTCGGAAACGGTGCGTTTGGGGCTGAAGGATGTGCGGTGGTTGGTGATGGGGGACGACGACACGGTTTTTGTGACGGAGAATTTGGTGAGAGTTTTGAACAAGTACGACCACAGGGGAATGTACTACATAGGAAGCTTGTCGGAGAGCCACTTGCAGAACATATTTTTCTCGTACGGGATGGCGTACGGGGGAGGGGGGTTTGCCATCAGTTACCCGTTGGCGAAGGCTCTGGAGAAGATGCAGGACCGTTGCATTCAGAGGTACCCCGCTCTGTATGGTTCCGATGATCGAATGCAAGCTTGCATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTCCACCAGTATGATGTGTATGGGAACTTGTTGGGGCTTCTTGGATCTCATCCAGTGACTCCATTGGTGTCACTGCACCACCTTGATTTGGTTGAGCCAATCTTCCCGAACATGTCTAGAGTAGAATCCCTTCAACGCCTTACCATACCAATGAAGCTTGACTCAGCATCTCTCATTCAACAATCCATTTGCTATGACACAAAAAGGAAATGGACCATTTCAGTTTCATGGGGTTTTGCTATTCAGATATTTCGTGGCATATTTTCTCCCCGGGAAATTGAAATGCCTTCTAGAACATTCCTTAATTGGTATAAGAGAGCAGATTACACGGCATATGCATTCAACACACGCCCCGTTACTAGAAACCCGTGTCAAAAGCCTTTTGTGTTCTACTTTTCAAAGGCGAAACTCAATTCAACATTACAACAGACAGTGACTGAATATGAAAGACATCGAGTTTCTCATCCAGAATGTCGCTGGAAGATGGCCGATCCTTCTGTTCTTGACAAAGTAGTGGTATACAAGAAGCCAGACCCTCATCTGTGGGATAGAGCACCAAGGAGAAACTGTTGCAGAGTGATGAAGTCGAACAAGAAAGGAAGGGTGGAGATAGATGTGGGTGTATGTAGAGATGGTGAGGTCACCGAACCTTAA 1452 0.4972 MKDSEKVTCGAQARPSASQKLMVWLILFMCVTYIVYSLKLVSTPTSTTCSHAPFSVQRLSAPNGTAKRERKTELRHVVFGIAASAKLWEQRKNYIKIWYKEKEMRGVVWLDGRVKSEAKEGLPRVMISSDTSNFAYRNKQGHRSAIRISRIVSETVRLGLKDVRWLVMGDDDTVFVTENLVRVLNKYDHRGMYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAKALEKMQDRCIQRYPALYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLLGLLGSHPVTPLVSLHHLDLVEPIFPNMSRVESLQRLTIPMKLDSASLIQQSICYDTKRKWTISVSWGFAIQIFRGIFSPREIEMPSRTFLNWYKRADYTAYAFNTRPVTRNPCQKPFVFYFSKAKLNSTLQQTVTEYERHRVSHPECRWKMADPSVLDKVVVYKKPDPHLWDRAPRRNCCRVMKSNKKGRVEIDVGVCRDGEVTEP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01810 483 Pfam Protein of unknown function, DUF604 204 457 IPR006740 -
Cca06g01810 483 Gene3D - 64 319 - -
Cca06g01810 483 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 8 481 - -
Cca06g01810 483 PANTHER FRINGE-RELATED 8 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01810 Cca-Chr6 33520448 33523769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01810 20 482 Glycosyltransferase AT4G23490 69.796 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01810 - - gmx:100801444 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01810 06 33520448 33523769 Cca06g01810 06 33520448 33523769 ECH
Cca06g01810 06 33520448 33523769 Cca09g02456 09 50021067 50024401 PCT