Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00260 TTTTGGGGTTTCAATTCATCATCATCATCTGATGATATACACTTGAAAACCATGTCCACCATGAAGAACCATTTCAAAGACCCTGAACATTTATACTCTCCATGGAGCTTCTCAAAGCTCACGGCTTTCTTCTTCCTCTTAATCTCCATCTCCTACCTCTTCTACTCCCTCAGATTCGTCAGCCACTCCTATGACTGTGATCAACCACCCCACATTCCCACCATCACTCACCATCACACATCCAACCCCCCACCTCAACAAAAGCCTCCACCTTTTGAAGAAACCAACCTTTCCCACATAGTCTTTGGCATAGGGGCCTCGGCCAAGCTCTGGAAGCAGCGAAAGGAGTACATCAAGATGTGGTGGAGGCCCAATGAGATGCGTGGAGTCGTGTGGTTGGAGCAGAGGGTGAAGACTGAACCCGGTGATGAAAATTCCTTACCCTTGTTGAGGATCTCCGGTGACACTTCAAGGTTCAAGTATAAGAATCCAAAGGGGCACAGATCGGCGATTAGAATCTCACGCATAGTGTCTGAGACTCTGAGGCTTGGGATGAAAGATGTGAGGTGGTTCGTGATGGGGGATGATGACACCGTTTTTGTTACAGAAAATCTGGTGAAGGTTTTGCAGAAGTATGACCATAACCAGTTCTATTACATTGGGAGTTCTTCAGAGAGTCATTTGCAGAATATATACTTTTCTTACAATATGGCTTATGGGGGTGGTGGTTTTGCCATCAGTTATCCTTTGGCTGTGGCATTGGAGAAAATGCAAGATAGGTGCATTCAGAGGTACCCTGGCCTGTATGGTTCTGATGACAGAATTCAAGCTTGTATGGCAGAATTAGGAGTTCCTCTCACCAAGGAGAAAGGCTTCCATCAGTTCGATGTGTACGGCAATCTCTTTGGGCTTCTGGCGGCCCATCCACTTACACCGCTGGTGTCCCTACATCACTTGGACGTGGTAGAGCCCATATTTCCAAACGTGAGCCGAGTGCGGGCTCTGGAGCGGCTGAACGGGCCCATGAAGCTGGACCCAGCCGGGCTCATGCAGCAATCTATTTGCTACGACAAGGGTCGGACCTGGACCGTATCCGTTTCGTGGGGATACGCGGTTCAAATATTCCGGGGCATTTTCTCGGCCAGGGAAATGGAGATGCCGGCGAGGACGTTCCTCAACTGGTACAGACGGGCCGATTACACGGCGTACCCGTTCAACACCCGCCCTGTCAGCCGCCATGTTTGTCAGAAACCTTTTGTCTATTTCTTGTCAGAGGCAGTGTATGACAGTGCTGCCAATGAAACTTCAACTCATTACATTCGGGTTCAGGAAAACCCCGATTGCAAGTGGAAAATGGAGGATCCGACCCGGATCAAATCGGTGGAAGTTCGTAAGAAAATCGACCCTCATTTGTGGGATAAGGCTCCAAGAAGAAATTGTTGTAGGGTTCGACGCACAAAGAAGAAAGGAAGTATGGTGATTGATGTTGGGGAATGCAGGGTAGATGAAGTTGTTGAATTGTAG 1524 0.4849 FWGFNSSSSSDDIHLKTMSTMKNHFKDPEHLYSPWSFSKLTAFFFLLISISYLFYSLRFVSHSYDCDQPPHIPTITHHHTSNPPPQQKPPPFEETNLSHIVFGIGASAKLWKQRKEYIKMWWRPNEMRGVVWLEQRVKTEPGDENSLPLLRISGDTSRFKYKNPKGHRSAIRISRIVSETLRLGMKDVRWFVMGDDDTVFVTENLVKVLQKYDHNQFYYIGSSSESHLQNIYFSYNMAYGGGGFAISYPLAVALEKMQDRCIQRYPGLYGSDDRIQACMAELGVPLTKEKGFHQFDVYGNLFGLLAAHPLTPLVSLHHLDVVEPIFPNVSRVRALERLNGPMKLDPAGLMQQSICYDKGRTWTVSVSWGYAVQIFRGIFSAREMEMPARTFLNWYRRADYTAYPFNTRPVSRHVCQKPFVYFLSEAVYDSAANETSTHYIRVQENPDCKWKMEDPTRIKSVEVRKKIDPHLWDKAPRRNCCRVRRTKKKGSMVIDVGECRVDEVVEL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00260 507 MobiDBLite consensus disorder prediction 71 92 - -
Vimu9g00260 507 PANTHER FRINGE-RELATED 39 503 - -
Vimu9g00260 507 Gene3D - 87 337 - -
Vimu9g00260 507 FunFam Fringe-related protein-like 87 343 - -
Vimu9g00260 507 Pfam Protein of unknown function, DUF604 229 481 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00260 Vimu-Chr9 3130259 3135514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00260 38 500 Glycosyltransferase AT5G41460 65.984 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00260 - - gmx:100789583 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00260 9 3130259 3135514 Vimu9g00260 9 3130259 3135514 ECH
Vimu6g00570 6 6903043 6905409 Vimu9g00260 9 3130259 3135514 PCT