Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0332 ATGCTGAGAGAGGTTGGGGTAGCTCCTTTTAGAGGAGTAAAGGACCCTCTTGCTCTTGAGGTGCTGAAGAAGGAAAAAGAGCCTGATCAAAGGACATATGCAGATGTAGTAAATCTGAGATTGGGGAGACTTGGGGACAAGGTTTGGCTGGAAGCGGGAGGGAGGGTGAAGCCTGGTAGATTAGAGCAACTGGGTCGTTGCTTAGTGGGTAGATGGGATAAGGTGGAGAACCATCCTCCTGCGTTGGATTATCTGAAAAACTGGGCTGTCAACGCTTGGCTCCTCAAAGGATCTTCTGTATTTGGGCAGAAGCCTGGTTTTGGAGGTTTTGGGTCCACTCCTACTCAAACAAGTCCTTTTGGAAGTGCTTTTCAACAGTCGCAACCAGCATTCGGAAGCAGTCTATTTGGTTCCTCTACGCCTTTTGGTGCAAGTCAAGCTGCATTCGGTGCTAGTAGCACCCCAGCCTTTGCTGCCACAAGCACACCAGCATTTGGTGCTACCAGCACACCAGCGTTTGGTGCTACTAGTACTACGCCCGCATTTGGTGCTACAAGCACCCCTGCCTTCGGTGCTACAGGCACTTCTGCCTTTGGTTCAACACCAAGTCCAACATTTGGTAGCACAGGCAGTGCATTTGGTGGTTCAGGCGCCCCAGTCTTTGCATCTAGTGGAGCATTTGGCGCTTCAAGCACCCCTGTTTTTGGATCATCAACTACATCTGCATTTGGTACCTCAAGCACTCCAGCATTTGGTGCTTCAAGCACCCCTGCCTTTGGTGCTTCTAGTACCCCATCTTTCAGTTTTGGGTCAACTCCAGCATTTGGCCAATCAACTGCTGCATTTGGTAGCAGCCCCTTTGGAACAGCTACTTCTCCTTTTGGAGCTCAAAGCTCTCCATTTGGAGCCCAGGCCACAACGCCAACATTTGGGGGCACTGGTTTTGGGCAGTCAGCTTTTGGGGGTCAACGTGGCGGAAGTAGAGTAGCTGCTTACACACCAACTACTGAAGTAGATAGTGGCAGTGGTACGCAGCCTGTGGGAAAGCTGGAGTCAATATCTGCCATGCCTGTCTACAAAGATAAAAGCCATGAAGAGCTGAGGTGGGAAGACTACCAGTTGGGGGACAAAGGTGGACCAGCTCCTGCTAGTCAGTCTACAGGTGGGGTTGGCTTTGGTGCATCCAACACACAGTCAAATCCTTTTGCTGCTTCACCAGCATTTGGTCAGTCATCTGCTAATCCTTTTTCCTCCTCAACATCTTCAAATCCATTTGCTCCAAGGACTCCAGCCTTTGGCAGTTCTGGCTTTGGAGGCTCATCCACTCCTGCATTCAGTTCATCCCCCTTTGGTGCTTCATCCACATCCAACCCTTTTGGATCAACTTCATCTGCAACACCTTCTATATTTGGAGCATCATCAACCCCTCCATTTGGAGCCAGTTCTTCTCCGTCTCTTTTTGGAGCATCAAGCTCATCAGGCTTTGGGTCATCACCTTCAATTTTTGGTTCCACTCCAGCTCAGGGAACAGCTCCAGCATTTGGTTCTGGCTTAAATTTTGGTAACACTCAATCATCACCATTGTTCCAGTCTTCAACACCTTCTCTTGGGCAGACGGCTTCTGCTTTTGGACAATCTACCTCGGCATTTGGACAGAGCACTACCCCTTCCTTTGGTCAATCAAGCATATTCAACACACCTTCGACTGGGTTTGGGGGAAACTTGTTTTCAAGTGCTCCACCACTACTCTCTACAAGCAACCCTGTGGGTTTCGGTCAAACAACTCCCTCTCTTTCAACACCATTTCAACCTGCTCAACCTGCTCAGACAATTGGTGCTTTTGGCTTTAGCAACTTCGGTCAGACACAAGCAGCTGGTGCAAGTGGCTTTGGTGGGGGGTCAAACATTTTTGGTTCAAATGCCTTTGGACAATCATCTGCTGCTCAAAACTCTGTAGTTGTGCAACCTGCTCCTGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTAAAAATGATGCTCCAAAGGTGCCATTTTTCAGTGATGATGAAGAAACACCTAGTACACCAAAGGCAGATGCTCTCTTTGTACCCAGGGAGAATCCAAGATCTCTTGTCATTCGCCCAATGGAACAGTGGTCTTTGAGATCTAATGCAGAAAAAACATCTCCATTGAAGGAGGCATCTAAACCAGTACATGAGAATGGTAAAGTGTCTGAAGAAGGATTAAATGGCTCCAATGCTGGTGATAAGGATGCAAATCTTGTTGAAAATGGCCTTGCCAAGGAGCGAATTCATACCATGAAGCCCAACCAGAAACCTAATGGAGTACATGATGATCATTCCATACAAAAAGGTGACTCGTATATCACTCTTACTGGGCACAGAGCTGGTGAGGCAGCCATTGTGTATGAACATGGGGCTGACATTGAAGCACTAATGCCAAAGCTTCGACGCTCTGATTACTACACGGAGCCTCGGATCCAAGAATTGGCAGCCAAGGAAAGGGCTGAACCTGGGTTCTGCCGCCGTGTTAAGGACTTTGTGGTTGGAAGGCATGGCTATGGCAGCATAAAATTCATGGGGGAGACAGATGTGCGGCGGCTTGATCTTGAGTCCCTTGTCCAGTTCAACAATCGAGAAGTGATTGTTTATATGGATGACAGCAAGAAACCTCCTGTTGGACAAGGCCTCAACAAGCCTGCTGAGGTGACCCTTCTAAACATAAAATGCTTTGACAAAAAGACCGGAGTTCAGTATACAGAAGGGCCAAAAATTGGTAAATACAAGGAGATGCTGAAGAGGAAGGCTGAGGACCAAGGTGCTGAGTTTGTGTCCTATGATCCCATGAAAGGAGAATGGAAGTTCAGGGTCAACCATTTCAGTAAATACGAGCTTGGAGATGAAGAGATAGATGACTGGGATATGCATGCTGTCCTGTATTGCTGA 3111 0.4783 MLREVGVAPFRGVKDPLALEVLKKEKEPDQRTYADVVNLRLGRLGDKVWLEAGGRVKPGRLEQLGRCLVGRWDKVENHPPALDYLKNWAVNAWLLKGSSVFGQKPGFGGFGSTPTQTSPFGSAFQQSQPAFGSSLFGSSTPFGASQAAFGASSTPAFAATSTPAFGATSTPAFGATSTTPAFGATSTPAFGATGTSAFGSTPSPTFGSTGSAFGGSGAPVFASSGAFGASSTPVFGSSTTSAFGTSSTPAFGASSTPAFGASSTPSFSFGSTPAFGQSTAAFGSSPFGTATSPFGAQSSPFGAQATTPTFGGTGFGQSAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQLGDKGGPAPASQSTGGVGFGASNTQSNPFAASPAFGQSSANPFSSSTSSNPFAPRTPAFGSSGFGGSSTPAFSSSPFGASSTSNPFGSTSSATPSIFGASSTPPFGASSSPSLFGASSSSGFGSSPSIFGSTPAQGTAPAFGSGLNFGNTQSSPLFQSSTPSLGQTASAFGQSTSAFGQSTTPSFGQSSIFNTPSTGFGGNLFSSAPPLLSTSNPVGFGQTTPSLSTPFQPAQPAQTIGAFGFSNFGQTQAAGASGFGGGSNIFGSNAFGQSSAAQNSVVVQPAPAANPFGTLPAMPQMSIGRTGTAPSIQYGISSMPVVDKPAPVRISSLLTSRHLSQRRIRLPARKYHPKNDAPKVPFFSDDEETPSTPKADALFVPRENPRSLVIRPMEQWSLRSNAEKTSPLKEASKPVHENGKVSEEGLNGSNAGDKDANLVENGLAKERIHTMKPNQKPNGVHDDHSIQKGDSYITLTGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYTEGPKIGKYKEMLKRKAEDQGAEFVSYDPMKGEWKFRVNHFSKYELGDEEIDDWDMHAVLYC* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 723 748 - -
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 293 316 - -
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 388 464 - -
Vvi2g0332 1036 PANTHER NUCLEOPORIN 223 1030 IPR037665 GO:0005643
Vvi2g0332 1036 Gene3D Peptidase S59, nucleoporin 869 1022 IPR036903 -
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 373 464 - -
Vvi2g0332 1036 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 866 1022 IPR036903 -
Vvi2g0332 1036 ProSiteProfiles NUP C-terminal domain profile. 873 1015 IPR007230 GO:0005643|GO:0006913|GO:0017056
Vvi2g0332 1036 FunFam Nuclear pore complex protein Nup98-Nup96 325 377 - -
Vvi2g0332 1036 FunFam nuclear pore complex protein NUP98A 869 1022 - -
Vvi2g0332 1036 Gene3D - 326 377 - -
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 770 805 - -
Vvi2g0332 1036 Pfam Nucleoporin autopeptidase 874 1020 IPR007230 GO:0005643|GO:0006913|GO:0017056
Vvi2g0332 1036 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0332 Vvi-Chr2 2663367 2676459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0332 855 1027 EF-hand Containing Proteins AT1G80680 47.399 1.07e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0332 K14297 - vvi:100249633 1634