Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00542 ATGGGTGAGAAAGAGTCGGAGAAAGTAATTTGGGAACCGATGAGAACCCCTTCTGCCACTCTCATTGCACCAACAGCACACCACCGAAACATACCAAAGCTTTTAGTCATTCTCGTCGTCTTTGTCTCCGTCACCTACGTCGTCTACACGCTCAAGCTCATCTCAACCTCACACGCATGCCACCACTTTTTATTCCCCACCGCCACCTTCTCCAAAACCGTTCCCACCGTCAATGCCACCTCTACCGTCACCGTCCCAGCCGTACCCTCCCTTCTCCGACGGGAGTCCCGCGAAACCATCTCCGACGACCGGACGGACCTCCGCCACGTGGTGTTCGGAATCGCCGCGTCGGCGAAGCTCTGGGAGCAGAGGAAGAACTACATCAAGCTCTGGTACCGTCCGCGGGAGATGCGCGGCGTGGTGTGGCTCGACGAGAAGGTGAAATTGGGGAAGGATAGCGATGCGCTGCCGCCGGTTAGAATCTCCGGCGACACCGAGAGGTTCCATTACACCAACAAGCAGGGGCACCGGTCCGCCATCAGGATCTCGCGGATCGTGGCGGAGACGCTGCGGCTGGGGTTAAAGGATGTGCGGTGGTTCGTGATGGGCGACGACGACACCGTTTTCGTGACCGAAAACCTAATTCGCGTTCTGAGGAAATACGATCACAATCAGTTCTACTACATTGGGAGTTTGTCGGAGAGTCACTTGCAGAACATTTACTTCTCTTACAACATGGCTTACGGTGGAGGAGGTTTTGCAATTAGTTACCCTCTCGCTAAGGCTCTGTACAAAATGCAGGACCGCTGCATTCAGCGTTACCCGGGTCTCTATGGTTCCGACGATAGAATGCAAGCGTGTATGGCCGAACTCGGTGTTCCACTCACAAAGGAAACCGGTTTTCACCAGTACGATGTGTATGGAAACCTGTTTGGGCTTCTGGCATCTCATCCGGTGACTCCATTGGTGTCACTGCACCACCTTGATGTGGTTGAGCCAATCTTCCCCAACGTGACCCGATTGCAAGCCCTTCAACGGTTGACTATACCAATGAAGCTTGACTCGGCAGGGCTGATGCAGCAATCCATCTGCTACGACAAATTAAAAAGCTGGACTGTTTCCGTTTCGTGGGGTTTTGCTGTTCAGATATTTCGTGGTGTATTTTCACCACGAGAGATAGAAATGCCTTCCAGAACATTCTTGAATTGGTATCGAAGAGCAGATTACACTGCATATGCATTCAACACCCGTCCAGTTAGCCGAAATCCATGCCAGAAGCCTTTTGTATTTTACTTTTCCAACGCAAAATACAGTTCTGCAATGGAACAAATAGTGAGCGAATATGAAAGGCACCGTGTTCCTCACCCGGAATGCAGGTGGAAGATGGATGATCCTGCTGCTCTTGACAAAGTGGAGGTATACAAGAAGCCAGATCCCAATCTGTGGAATAGAGCTCCGAGGAGAAACTGTTGCAGAGTGAGGAGGACGAAGGAGAAAGGGAAGATGGTGATAGATGTGGGTATGTGCAGAGATGGTGAGGTAAGCGAGACATAA 1554 0.5154 MGEKESEKVIWEPMRTPSATLIAPTAHHRNIPKLLVILVVFVSVTYVVYTLKLISTSHACHHFLFPTATFSKTVPTVNATSTVTVPAVPSLLRRESRETISDDRTDLRHVVFGIAASAKLWEQRKNYIKLWYRPREMRGVVWLDEKVKLGKDSDALPPVRISGDTERFHYTNKQGHRSAIRISRIVAETLRLGLKDVRWFVMGDDDTVFVTENLIRVLRKYDHNQFYYIGSLSESHLQNIYFSYNMAYGGGGFAISYPLAKALYKMQDRCIQRYPGLYGSDDRMQACMAELGVPLTKETGFHQYDVYGNLFGLLASHPVTPLVSLHHLDVVEPIFPNVTRLQALQRLTIPMKLDSAGLMQQSICYDKLKSWTVSVSWGFAVQIFRGVFSPREIEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYFSNAKYSSAMEQIVSEYERHRVPHPECRWKMDDPAALDKVEVYKKPDPNLWNRAPRRNCCRVRRTKEKGKMVIDVGMCRDGEVSET 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00542 517 Pfam Protein of unknown function, DUF604 238 491 IPR006740 -
Viun3g00542 517 FunFam Fringe-related protein-like 97 352 - -
Viun3g00542 517 Gene3D - 98 351 - -
Viun3g00542 517 PANTHER FRINGE-RELATED 29 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00542 Viun-Chr3 3303219 3306676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00542 3 516 Glycosyltransferase AT4G23490 67.871 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00542 - - gmx:100818244 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00542 3 3303219 3306676 Viun3g00542 3 3303219 3306676 ECH
Viun2g02608 2 31920802 31924986 Viun3g00542 3 3303219 3306676 PCT