Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01826 . . . . . . . . . . . . . . Vimu9g01530 . . .
Pvu10g0370 . . . . Aev09g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g0844
Pvu10g0371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0372 . . . . . . . . . . . . . . . Bva02g00101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01829 . . . . . . . . . . . . . . . . . .
Pvu10g0374 . . Adu02g00145 . Aev09g0412 Ahy19g0766 Ahy2g0127 Aip09g00852 . . Amo02g0411 Apr10g0196 . . . . Car07g03283 Cca01g01395 . . . . Gma03g00884 Gma16g00686 Gso16g0639 Gso3g0824 Lal14g0175 . . Lan12g0055 . . . . . . . . . Mal5g0256 . . . Mtr8g0220 . . . Psa4g4796 . Pumo7g02088 . . . Ssu2g0699 . . . Tsu08g00185 . . . . . Vra9g0843
Pvu10g0375 . . Adu02g00143 Aed2g1637 Aev09g0410 Ahy19g0768 Ahy2g0125 Aip09g00857 . Amo19g0733 . Apr10g0195 Arst2g00185 . . . . . . . . . Gma03g00886 Gma16g00683 Gso16g0638 Gso3g0826 . Lal7g0084 . Lan12g0056 Lan1g0902 Lan1g2051 . Lasa4g00234 . . . . . Mal5g0255 Mepo1g04558 Mesa29g05227 . Mtr8g0219 Phac10g00391 Phco1g01833 . Psa4g4803 Pste7g00391 . . . Spst4g01116 Ssu2g0700 . . Trre15g00230 . . . Vimu9g01535 . Vivi7g03490 Vra9g0840
Pvu10g0376 . . . . . Ahy19g0769 Ahy2g0124 Aip09g00858 . . Amo02g0415 Apr10g0194 Arst2g00184 . . . Car07g03284 Cca01g01396 . . . . Gma03g00887 . . Gso3g0828 Lal14g0172 . . Lan12g0057 . . . Lasa4g00235 . . . . . Mal5g0254 Mepo1g04559 Mesa29g05229 . Mtr8g0218 Phac10g00390 Phco1g01836 . Psa4g4802 Pste7g00389 Pumo7g02087 Rops4g00358 Seca4g10325 Spst4g01115 Ssu2g0701 . . Trre15g00229 Tsu08g00184 Vian9g01370 . Vimu9g01536 Viun10g00375 Vivi7g03489 Vra9g0839
Pvu10g0377 . . Adu02g00142 Aed2g1639 Aev09g0409 Ahy19g0770 Ahy2g0123 Aip09g00859 . Amo19g0734 Amo02g0416 . . . . . . Cca01g01399 . . . . Gma03g00888 Gma07g01149 Gso7g1059 Gso3g0829 . Lal7g0083 . . . Lan1g2052 . . . . . . Lja3g4513 . . . . . . . . . . Pumo7g02084 . . . Ssu2g0702 . . . . . . . . . Vra9g0837
Pvu10g0378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja3g4513 Chr3 86944894 86947749 +
Pvu Pvu10g0369 Chr10 5222648 5223130 +
Phco Phco1g01826 Chr1 57893003 57894531 +
Vimu Vimu9g01530 Chr9 24478384 24480353 -
Pvu Pvu10g0370 Chr10 5230315 5231880 +
Aev Aev09g0373 Chr09 3213998 3215507 -
Vra Vra9g0844 Chr9 9893588 9895365 +
Pvu Pvu10g0371 Chr10 5269519 5270952 +
Pvu Pvu10g0372 Chr10 5273631 5275540 +
Bva Bva02g00101 Chr02 1790444 1795165 +
Pvu Pvu10g0373 Chr10 5279680 5281244 -
Phco Phco1g01829 Chr1 57904496 57906264 -
Pvu Pvu10g0374 Chr10 5285366 5288993 -
Adu Adu02g00145 Chr02 1596115 1598833 +
Aev Aev09g0412 Chr09 3538498 3544349 +
Ahy Ahy19g0766 Chr19 10905853 10908914 -
Ahy Ahy2g0127 Chr2 1396270 1399315 +
Aip Aip09g00852 Chr09 11164093 11164776 -
Amo Amo02g0411 Chr02 5109729 5112774 -
Apr Apr10g0196 Chr10 4561735 4564985 +
Car Car07g03283 Chr07 60502749 60506245 -
Cca Cca01g01395 Chr01 27865068 27868570 +
Gma Gma03g00884 Chr03 31612537 31613523 -
Gma Gma16g00686 Chr16 8204767 8207064 +
Gso Gso16g0639 Chr16 8196411 8199968 +
Gso Gso3g0824 Chr3 30159204 30160181 -
Lal Lal14g0175 Chr14 1889135 1892163 +
Lan Lan12g0055 Chr12 503403 506541 -
Mal Mal5g0256 Chr5 4264424 4268388 +
Mtr Mtr8g0220 Chr8 2479835 2483748 +
Psa Psa4g4796 Chr4 418884396 418886929 -
Pumo Pumo7g02088 Chr7 57112195 57115887 +
Ssu Ssu2g0699 Chr2 38322842 38326113 -
Tsu Tsu08g00185 Chr08 1686799 1687497 +
Vra Vra9g0843 Chr9 9879172 9883036 +
Pvu Pvu10g0375 Chr10 5304495 5309692 +
Adu Adu02g00143 Chr02 1556122 1565308 -
Aed Aed2g1637 Chr2 20715125 20726981 +
Aev Aev09g0410 Chr09 3515119 3528505 -
Ahy Ahy19g0768 Chr19 11029273 11033382 +
Ahy Ahy2g0125 Chr2 1352910 1357010 -
Aip Aip09g00857 Chr09 11264032 11265508 +
Amo Amo19g0733 Chr19 11415065 11419498 +
Apr Apr10g0195 Chr10 4551344 4556582 +
Arst Arst2g00185 Chr2 1542750 1546871 -
Gma Gma03g00886 Chr03 31637167 31643449 +
Gma Gma16g00683 Chr16 8155276 8160728 -
Gso Gso16g0638 Chr16 8146900 8152586 -
Gso Gso3g0826 Chr3 30183481 30189741 +
Lal Lal7g0084 Chr7 862931 867828 -
Lan Lan12g0056 Chr12 510870 512646 +
Lan Lan1g0902 Chr1 19815543 19819412 +
Lan Lan1g2051 Chr1 35615183 35620161 +
Lasa Lasa4g00234 Chr4 8607308 8609273 -
Mal Mal5g0255 Chr5 4250561 4254667 -
Mepo Mepo1g04558 Chr1 53417659 53423383 +
Mesa Mesa29g05227 Chr29 85676584 85678669 -
Mtr Mtr8g0219 Chr8 2465998 2471572 -
Phac Phac10g00391 Chr10 5068364 5074885 +
Phco Phco1g01833 Chr1 57940611 57947016 +
Psa Psa4g4803 Chr4 418997414 419004015 -
Pste Pste7g00391 Chr7 3693702 3700006 -
Spst Spst4g01116 Chr4 44073519 44082614 -
Ssu Ssu2g0700 Chr2 38368202 38374234 +
Trre Trre15g00230 Chr15 1566129 1569401 -
Vimu Vimu9g01535 Chr9 24528744 24538757 +
Vivi Vivi7g03490 Chr7 100620659 100625295 +
Vra Vra9g0840 Chr9 9842236 9847090 -
Pvu Pvu10g0376 Chr10 5322226 5328430 +
Ahy Ahy19g0769 Chr19 11035752 11041832 +
Ahy Ahy2g0124 Chr2 1346686 1351772 -
Aip Aip09g00858 Chr09 11265564 11268947 +
Amo Amo02g0415 Chr02 5157098 5162151 +
Apr Apr10g0194 Chr10 4541378 4548422 +
Arst Arst2g00184 Chr2 1536658 1541594 -
Car Car07g03284 Chr07 60511687 60520307 +
Cca Cca01g01396 Chr01 28006704 28013558 +
Gma Gma03g00887 Chr03 31652924 31659013 +
Gso Gso3g0828 Chr3 30199177 30205303 +
Lal Lal14g0172 Chr14 1877214 1880737 -
Lan Lan12g0057 Chr12 513330 517641 +
Lasa Lasa4g00235 Chr4 8615173 8619290 -
Mal Mal5g0254 Chr5 4242140 4244898 -
Mepo Mepo1g04559 Chr1 53425949 53429844 +
Mesa Mesa29g05229 Chr29 85704386 85704868 -
Mtr Mtr8g0218 Chr8 2459630 2463768 -
Phac Phac10g00390 Chr10 5054739 5059975 +
Phco Phco1g01836 Chr1 57952541 57956730 +
Psa Psa4g4802 Chr4 418931913 418935414 -
Pste Pste7g00389 Chr7 3678165 3683635 -
Pumo Pumo7g02087 Chr7 57065456 57076491 -
Rops Rops4g00358 Chr4 10742608 10755546 +
Seca Seca4g10325 Chr4 238717966 238738643 -
Spst Spst4g01115 Chr4 44058348 44069889 -
Ssu Ssu2g0701 Chr2 38380485 38384390 -
Trre Trre15g00229 Chr15 1560656 1562540 -
Tsu Tsu08g00184 Chr08 1675265 1680042 -
Vian Vian9g01370 Chr9 29159574 29162735 +
Vimu Vimu9g01536 Chr9 24539796 24543581 +
Viun Viun10g00375 Chr10 3070542 3075788 -
Vivi Vivi7g03489 Chr7 100628757 100631981 +
Vra Vra9g0839 Chr9 9834094 9839868 -
Pvu Pvu10g0377 Chr10 5348634 5351369 -
Adu Adu02g00142 Chr02 1543705 1550790 -
Aed Aed2g1639 Chr2 20732776 20733237 +
Aev Aev09g0409 Chr09 3512517 3513886 +
Ahy Ahy19g0770 Chr19 11047849 11051079 +
Ahy Ahy2g0123 Chr2 1339264 1341206 -
Aip Aip09g00859 Chr09 11274895 11277001 +
Amo Amo19g0734 Chr19 11425981 11429507 +
Amo Amo02g0416 Chr02 5167628 5169646 +
Cca Cca01g01399 Chr01 28211820 28215127 +
Gma Gma03g00888 Chr03 31675702 31678405 +
Gma Gma07g01149 Chr07 15140246 15142932 -
Gso Gso7g1059 Chr7 14819623 14822265 -
Gso Gso3g0829 Chr3 30221996 30224707 +
Lal Lal7g0083 Chr7 857027 859499 -
Lan Lan1g2052 Chr1 35623893 35626635 +
Lja Lja3g4513 Chr3 86944894 86947749 +
Pumo Pumo7g02084 Chr7 57054048 57055143 -
Ssu Ssu2g0702 Chr2 38434699 38437915 +
Vra Vra9g0837 Chr9 9818682 9827623 -
Pvu Pvu10g0378 Chr10 5360493 5362875 -