Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01396 ATGGAAGACTCCGATTCTGTTGCTATGCTAATAGATTCTACAAGTTCTAAGATACAACAGCTGCAAAAGGCGTTTGCCGAACTTGAAAGTTACCGAGCTGTTACGCTGAACTTGAAATGGAAAGAACTAGAGGAACATTTTCATGGTCTTGAGAAATCCTTGAAGAGGCGCTTTCATGAATTGGAAGACCAGGAAAAAGAGTTTGAGAACAAAACAAGGAAGGCTCGTGAGATATTGGAGAAGCGGGAAGCAGATGTTTATGCCAAGGAGAAAGCCACATTGCAGAGGCTTCAGGAGAAAAGAGATGCTGCTGTATTTGACATTGTGAATGCTAGAGAAAAGCACAGGAAGGTTTCATCAAGTGATTTGGCCATTATCTCCAATGGGGATAAGGGGACACTCTGTTTGGAGGAGAAGCCAGTGGAAGCTGTGTCTTTTGCAGCTAAAGGTAGCTTGGAAGAAGTGAAGTCTCCTGAAAATGGAAATCTGGAGTTGTCTTTTCCTGACTTGGTAAAACTATGTAAAGAGATGGATGCTGCTGGACTTCATAAATTCATATCTGATAACCGCAAGAACCTTGCTGCTGTAAGGGAGGAAATACCACATGCATTAAGAGCTGCTCCTAATGCTGCCTGTCTAGTTTTAGATTCTCTGGAAGGGTTTTACTGTACAGAAGTGTCAAATCAGGATGTAAAGAAGGATGCTAACTTATTGGGTCTTCGTCGAACATGTATCATGCTGATGGAATGTCTATGTGATTTCCTGAGCAACTCAGATTGTGTTTCCTATGTAATTTCAGAAGATATCAGGGACAGGGCAAAGGCAGTTGCTGAAGAATGGAAACCCAAATTGGATGCTCTTGACATGGATGCTAGCAATGGGAATTCCTTAGAGGCTCATGCTTTTTTGCAACTTCTAGCCAGTTTTCGTATTGCCTCTGGTTTTAGCGAGGAGGAGTTATCCAGGCTAATTCCAATGGTATCCCGACGTCGCCAAACTGCTGATTTATGCCGTTGCCTTGGGCTGTCAGAGAAGATGCCTGGTGTCATTGAAGTTTTGGTGAATAGTGGGCGGCAAATTGATGCTGTTAACTTGGCTTTTGCATTTGATCTTATAGAACAATTTTCACCCATTCCTTTACTGAAGTCTTACTTGAAGGATGCTAGAAAAGCTTCTTCTCCTGTCAAAAGTGTTACCTCATCTCCCACTGCACAGATTGAGGTTAATGATAGAGAGCTGATTGCGCTTAAAGCTGTGATTAAGTGCATTGAAGATCATAAACTTGATGACCAGCATCCTGTAGATCCTCTCCAGAAACGAGTAGCCCTACTAGAGAAGGCGAAGGCTGACAAGAAAAGGGTAACTGAAGCAACAAAGCCTCAACCCAAGAGACCTCGTGCTAACGGTGTGGGATATGGTCCGCGTGTCACTAACATTCCATCTGACAAAACGTCCTATGCTAGAGTTGCTGACAGGTATCCTCAATATGTGTATGACCGATCTTACATGTACCCTGTACCAACTGACAATCACTGCCCCCCTCTCATGGGTTCTGCAACTTATAACATCTCTCCTAATCCTGGCAACTACTTTGGAAATGGCTATCAGTACCAAGCTACATATCTCCATTAG 1632 0.432 MEDSDSVAMLIDSTSSKIQQLQKAFAELESYRAVTLNLKWKELEEHFHGLEKSLKRRFHELEDQEKEFENKTRKAREILEKREADVYAKEKATLQRLQEKRDAAVFDIVNAREKHRKVSSSDLAIISNGDKGTLCLEEKPVEAVSFAAKGSLEEVKSPENGNLELSFPDLVKLCKEMDAAGLHKFISDNRKNLAAVREEIPHALRAAPNAACLVLDSLEGFYCTEVSNQDVKKDANLLGLRRTCIMLMECLCDFLSNSDCVSYVISEDIRDRAKAVAEEWKPKLDALDMDASNGNSLEAHAFLQLLASFRIASGFSEEELSRLIPMVSRRRQTADLCRCLGLSEKMPGVIEVLVNSGRQIDAVNLAFAFDLIEQFSPIPLLKSYLKDARKASSPVKSVTSSPTAQIEVNDRELIALKAVIKCIEDHKLDDQHPVDPLQKRVALLEKAKADKKRVTEATKPQPKRPRANGVGYGPRVTNIPSDKTSYARVADRYPQYVYDRSYMYPVPTDNHCPPLMGSATYNISPNPGNYFGNGYQYQATYLH 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01396 543 Coils Coil 94 114 - -
Cca01g01396 543 Coils Coil 51 81 - -
Cca01g01396 543 PANTHER FRIGIDA-LIKE PROTEIN 3 543 - -
Cca01g01396 543 MobiDBLite consensus disorder prediction 450 478 - -
Cca01g01396 543 Pfam Frigida-like protein 168 455 IPR012474 -
Cca01g01396 543 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 3 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01396 Cca-Chr1 28006704 28013558 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01396 - - gmx:100806993 986.482