Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0701 ATGGAAGACACAGATTCAGTTGCTACACTGATAGATTCTACTACTTCTAAGATACAACAGCTGCAGAAGGCATTTGCTGAACTTGAAAGTTATCGGGCTGTTACTCTTAACTTGAAATGGAAAGAACTAGAGGAACATTTCCATGGTCTTGAGAAATCCTTGAAGAGGCGCTTTCATGAATTAGAAGACCAAGAAaaagagtttgaaaacaaaacaatgaaaGCTCGTGAGCTGTTGAAGAAGCGGGAAGCAGCTGTTTTTGCCAAGGAGCAAGCTTCGTTGTGGAGGCTTCAAGAGAAAAGAGACGCTGCTGTATTTGCCATTGTAAATGCTCGAGAAAAGCACCGGAAGGTTTCATTAGGTGAATTGGCTACTGTCTCGAATGGTGGTAAAGGGATACCAGGAGTGGAGGAGAACCCTGTGGGTACTGTGTCCATTGCAGCTGAAGGTAATGTGGAAGATGTGAAACTTCCTGAAAATGGAAATGTGGAGTTGATATCTTATCCAGAGTTAGTAAAACTATGCAAAGAGATGGATGCTGCTGGACTTCACAAATTCATATCTGATAACCGTAAGAACCTTGCTGCTGTAAGGGAGGAAATACCAAATGCATTAAGAGCTGCTCCTAATGCTGCCCGTTTAGTTTTAGATTCTCTGGAAGGATTTTACTATACAGAAGTGTCAAATCAGGACGTAAAGAAGGATGCAAACTTATTGGGTCTTCGCCGAACCTGTATCATGCTGATGGAATGTCTATGTGATTTCCTGAGCAACTCAGATTGTGTTTCTAATGTAATTTCAGAAGATATCAAGGACAGGGCAAAGGCAGTTGCTGAAGAATGGAAACCCAAATTGGATGCTCTTGACATGGATGCTAGCAATGGGAATTCCTTGGAGGCTCATGCATTTTTACAACTTCTAGCTAGTTTTGGTATTGCCTCTGGTTTTGATGAGGAAGAGTTATCCAGATTGATTCCAATGGTGTCTCGGCGCCGCCAAACTGCCGATTTATGTCGTTTCCTTGGGCTGTCAGAAAAGATGCATGGTGTAATCGAGGTTTTGGTGAACAGTGGACGACAAATTGATGCTGTAAACTTGGCTTTTGCATTTGATCTTACTGAGCAATTTTCTCCCGTTTCTTTACTGAAGTCCTACTTGAAAGATGCTAGAAAAGCTTCTTCTCCTGTTAAAAGTGTTAACTCATCTCCCACTGTGCAGATTGAGGTTAATGACCGCGAGCTGGTTGCTCTTAAGGCTGTAATCAAGTGCATTGAAGAACATAAACTTGATGAGCAGTATCCTCTGGAACCTCTCCAGAAACGATTGGTGCAGCTAGAGAAGGCCAAAGCTGACAAGAGGAGGGAAACTGAAGCGACAAAGCCTCAACCCAAGAGACCCCGTGCTAATGGCGTGGGATACGGTCCTCGTGTGACTAACATCGCCTCTGATAAAACTTCCTATGCTAGAATTGCTGACAGGTATCCACAGTACGTGTATGACCGACCTTACATGTACCCTGGACCAACTGATAATCATTGTCCCCCTATCATGAGCACTGCAACGTACAACATCTCTCCCAGTCATGCCAACTACTTTGGAAATGGCTATCAGTACCAAGCTACATATCTCCACTAG 1635 0.4287 MEDTDSVATLIDSTTSKIQQLQKAFAELESYRAVTLNLKWKELEEHFHGLEKSLKRRFHELEDQEKEFENKTMKARELLKKREAAVFAKEQASLWRLQEKRDAAVFAIVNAREKHRKVSLGELATVSNGGKGIPGVEENPVGTVSIAAEGNVEDVKLPENGNVELISYPELVKLCKEMDAAGLHKFISDNRKNLAAVREEIPNALRAAPNAARLVLDSLEGFYYTEVSNQDVKKDANLLGLRRTCIMLMECLCDFLSNSDCVSNVISEDIKDRAKAVAEEWKPKLDALDMDASNGNSLEAHAFLQLLASFGIASGFDEEELSRLIPMVSRRRQTADLCRFLGLSEKMHGVIEVLVNSGRQIDAVNLAFAFDLTEQFSPVSLLKSYLKDARKASSPVKSVNSSPTVQIEVNDRELVALKAVIKCIEEHKLDEQYPLEPLQKRLVQLEKAKADKRRETEATKPQPKRPRANGVGYGPRVTNIASDKTSYARIADRYPQYVYDRPYMYPGPTDNHCPPIMSTATYNISPSHANYFGNGYQYQATYLH 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0701 544 Coils Coil 435 455 - -
Ssu2g0701 544 PANTHER FRIGIDA-LIKE PROTEIN 3 544 - -
Ssu2g0701 544 Pfam Frigida-like protein 167 456 IPR012474 -
Ssu2g0701 544 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 3 544 - -
Ssu2g0701 544 Coils Coil 51 81 - -
Ssu2g0701 544 MobiDBLite consensus disorder prediction 449 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0701 Ssu-Chr2 38380485 38384390 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0701 - - gmx:100807523 967.222