Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01399 ATGACACCAACAATCCCCTCAGATCTCACTGAATTCGTGATGCTTCAAGGGAATGGAGTAAAGGGTCTCTCTGAAATGGGTCTAAAGAGTCTCCCAAGTCAATATATCCAACCTTTGGAAGAGAGGATGATCAATAATGTTGTGCCTCATCAAGAGTCCATTCCCATCATTGACATGTCCAATTGGAATGACCCAAAAGTGGAAGATGCAATTTGTGATGCAGCTGAGAAGTGGGGTTTCTTCCAAATCATCAACCATGGGGTGCCCCTTCAAGTGTTGGACAATGTTAAGGATGCTACTTATAGGTTTTATGGACTTCCACCTGAGGAGAAGGTTAGGTACACAAAAGATAACTCTCCATCCAAGCATGTGAGGTATGGGTCTAGCTTTAGCCCTCAAGCAGAGAAAGCCCTAGAGTGGAAAGATTATCTAAGCCTCTTCTATGTTTCTGATGATGAGGCTGCAGCAATGTGGCCCCCTGCATGCAGGGATGAAGCACTAGAATACATGAAGAGATCCGAAACCGTGATCAAACGACTTTTAAATGTGTTGATGAAGAGGCTAAATGTGAGCAAAATTGATGAGACAAATGAATCACTATTATTGGGTTCAAAGAGGATCAACCTAAACTATTACCCTATTTGCCCTAACCATGACCTAACCGTAGCAATAGGTCGACATTCTGATGTCTCAACCCTAACCGTTCTCCTTCAAGATGAAACTGGTGGCTTGTATGTTCGAGCACCAGATCACCATAATTGGATTCACGTGCCACCGATCTATGGTGCCCTAGTTATCAACATAGGTGATGCACTTCAAATAATGAGCAATGGACGATACAAGAGTATTGAGCATCGTGTGACAGCCAATGGAAGCAAGACTAGGGTTTCGGTGCCTATTTTTGTGAACCCTAGACCCTCAAATGTGATTGGCCCTTTGCCTCAAGTGCTTGCTAGTGGGGAGAAGGCAATATATAAGAATGTGCTGTATTTGGAATATGTGAAACATTTCTTTAGCAAACCTCATGATGGGAAGATGACCATTGAATATGCCAAGATATGTTGA 1065 0.4291 MTPTIPSDLTEFVMLQGNGVKGLSEMGLKSLPSQYIQPLEERMINNVVPHQESIPIIDMSNWNDPKVEDAICDAAEKWGFFQIINHGVPLQVLDNVKDATYRFYGLPPEEKVRYTKDNSPSKHVRYGSSFSPQAEKALEWKDYLSLFYVSDDEAAAMWPPACRDEALEYMKRSETVIKRLLNVLMKRLNVSKIDETNESLLLGSKRINLNYYPICPNHDLTVAIGRHSDVSTLTVLLQDETGGLYVRAPDHHNWIHVPPIYGALVINIGDALQIMSNGRYKSIEHRVTANGSKTRVSVPIFVNPRPSNVIGPLPQVLASGEKAIYKNVLYLEYVKHFFSKPHDGKMTIEYAKIC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01399 354 Gene3D - 9 336 IPR027443 -
Cca01g01399 354 SUPERFAMILY Clavaminate synthase-like 19 344 - -
Cca01g01399 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 304 IPR005123 -
Cca01g01399 354 Pfam 2OG-Fe(II) oxygenase superfamily 209 304 IPR044861 -
Cca01g01399 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 158 IPR026992 -
Cca01g01399 354 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 8 346 - -
Cca01g01399 354 PANTHER FERULOYL COA ORTHO-HYDROXYLASE 1-LIKE 8 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01399 Cca-Chr1 28211820 28215127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01399 19 344 Glycosyltransferase AT5G59530 35.673 3.26e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01399 K06892 - gmx:100527581 647.891