Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0372 ATGTACACACTCACTCTCAAGGAGACTATTCGGGGCCACATTAAAAGATGCATGACCCAAAAATCACTAGAATCGGTCTATGCCTGCATGATCAAGACTAATACAACCCAAGATTGCTTTCTCATGAATCAATTTATAAGTTCTTGTTCAGCCCTTTCTTACGTTGATTTGGCAAGTTCAACTTTTGCCCACATGGAAAATCCTAATGCTTTCGTATATAATGCATTGATTAGAGGTTGTGGTCATTGCTGTTACCCAGATCGTGCTTTGGGGTTTTATATTCACATGCTGAGGAATAATGTCATGCCTAACAGTTATTCCTTTTCTTCTTTGATCAAGGCTTGCACTTTGTTGATGGATTCAGCTTTTGGCAAAGCTGTTCATGGCCATATTTGGAAAAATGGGTTTGATTCTCATATGTTTGTGCAGACAACTTTGATTGAGTTTTACTCAACTTTGGGTGATGTGAGTGGCTCAAGAAGGGTGTTTGATGATATGCCTGAAAGAGATGTTTTTGCATGGACAACGATGATTTCAGCCCTTGTTCGGGATGGGGATATGGCTTCTGCAGGTAATCTGTTTGATGAGATGCCTGAAAAGAATATAGCTACGTGGAATGCCATGATTGATGGGCATGCAAAATTAGGCAATGCTGAGTCTGCTGAATTTTTGTTTAACCAAATGCTTGCAAGGGATATTATTTCGTGGACAACCATGATGAGTTGCTTTTCTCGGAACAAAAGATATATGGACGTGGTAAGACTTTTTCATGATATGATCGACAAAGGAATGATTCCTGATGAAGTGACCATGAGCACTGTCATCTCAGCCTGTGCTCATCTGGGAGCCCTTGACTTAGGAAAGGAGGTGCACCTTTATCTAATGCTGCATGAATTTGATCTAGATGTGTACATTGGGTCTTCACTGATTGATATGTATGCAAAATGTGGTAGCATAGATAGGGCCCTTTTGGTGTTCTATAAATTGCAGAACAAAAACCTGTATTGTTGGAATTCTATCATTGATGGGCTTGCAACACACGGCTATGCGAAAGAAGCATTAAGAATGTTTGGTGCAATGGAAAGCAAGAGAATCCGACCAAATGCAGTTACATTCATTAGTATCCTAAGTGCTTGCACACATACAGGATTTGTAGAAGAGGGTCATTGCAGGTTTATGAGCATGATCAAGGACTACTGTATCACTCCTCAAGTTGAACACTACGGATGCATGGTCGACCTATTGAGCAAGGCTGGTTTGCTTGAGGATGCTTTAGAGATGGTCAGAAACATGGCAGTTGAACCTAATTCTTTTATTTGGGGTGCCTTGTTGAATGGTTGTAAGCTTCACAAAAACTTGGAAATAGCTCATATTGCAGTTCAAAATCTGATGGTTTTGGAGCCAAGTAACAGTGGACATTACAGTCTCCTAGTGAGCATGCATGCTGAGGTAAATAGGTGGAGTGAGGTTGCAAAGATTCGGACAGCCATGAAGGATCTGGGTGTAGAGAAGAGATGTCCTGGAGCTAGCTGGGTTGAAATCAATAAGAGGGTTCATGTATTTGCAGCTTCTGATACGTATCACCCTTCTTATAGTCAATTTCACCTGTTGCTAGCTGAACTTGATGACCAGCTCAGGCTAGAAGGCCATGTCCCTGAACAGGAGTCGATTCTATAG 1677 0.4126 MYTLTLKETIRGHIKRCMTQKSLESVYACMIKTNTTQDCFLMNQFISSCSALSYVDLASSTFAHMENPNAFVYNALIRGCGHCCYPDRALGFYIHMLRNNVMPNSYSFSSLIKACTLLMDSAFGKAVHGHIWKNGFDSHMFVQTTLIEFYSTLGDVSGSRRVFDDMPERDVFAWTTMISALVRDGDMASAGNLFDEMPEKNIATWNAMIDGHAKLGNAESAEFLFNQMLARDIISWTTMMSCFSRNKRYMDVVRLFHDMIDKGMIPDEVTMSTVISACAHLGALDLGKEVHLYLMLHEFDLDVYIGSSLIDMYAKCGSIDRALLVFYKLQNKNLYCWNSIIDGLATHGYAKEALRMFGAMESKRIRPNAVTFISILSACTHTGFVEEGHCRFMSMIKDYCITPQVEHYGCMVDLLSKAGLLEDALEMVRNMAVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVSMHAEVNRWSEVAKIRTAMKDLGVEKRCPGASWVEINKRVHVFAASDTYHPSYSQFHLLLAELDDQLRLEGHVPEQESIL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0372 558 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Pvu10g0372 558 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Pvu10g0372 558 TIGRFAM PPR: pentatricopeptide repeat domain 204 233 IPR002885 -
Pvu10g0372 558 TIGRFAM PPR: pentatricopeptide repeat domain 173 202 IPR002885 -
Pvu10g0372 558 TIGRFAM PPR: pentatricopeptide repeat domain 72 104 IPR002885 -
Pvu10g0372 558 Pfam E motif 450 513 IPR046848 -
Pvu10g0372 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Pvu10g0372 558 Gene3D Tetratricopeptide repeat domain 305 526 IPR011990 GO:0005515
Pvu10g0372 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu10g0372 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Pvu10g0372 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Pvu10g0372 558 PANTHER OS01G0913400 PROTEIN-RELATED 9 554 - -
Pvu10g0372 558 Gene3D Tetratricopeptide repeat domain 123 200 IPR011990 GO:0005515
Pvu10g0372 558 Gene3D Tetratricopeptide repeat domain 6 122 IPR011990 GO:0005515
Pvu10g0372 558 Pfam PPR repeat 173 202 IPR002885 -
Pvu10g0372 558 Pfam PPR repeat 407 431 IPR002885 -
Pvu10g0372 558 Pfam PPR repeat family 332 379 IPR002885 -
Pvu10g0372 558 Pfam PPR repeat family 232 279 IPR002885 -
Pvu10g0372 558 Pfam PPR repeat family 68 115 IPR002885 -
Pvu10g0372 558 PANTHER BNAC05G04200D PROTEIN 9 554 - -
Pvu10g0372 558 Gene3D Tetratricopeptide repeat domain 201 300 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0372 Pvu-Chr10 5273631 5275540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0372 39 558 Glycoside Hydrolase AT3G49170 28.369 6.91e-88 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0372 - - gmx:100819008 976.081