Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0700 ATGGAAGACACGGATTCAGTTGCTATGCTGATAAATTCTACAACTTCTAAGATACAACAGCTGCAAAAGGCGTTTGCTGAACTTGAAAGTTACCGAGCTGTTACTCTGAACTTGAAATGGAAAGAACTAGAGGAACATTTCCATGGTCTTGAGAAATCCTTGAAGAGGCGCTTTCATGAATTGGAAGACCAGGAAAAAGAGTTTGAGAACAAAACAAGGAAGGCTCGGGAGATGCTGGAGAAGCAGGAAGCAGCTGTTTATGCCAAGGAGCAAGCCAAGTTGCAGAGGCTACAGGAGAAAAGAGATGCTGCTGTATTTGCCATTGTGAATGCTCGAGAAAAGCAGAGGAAGGTTTCGTCAAGTGAATTGGCTGTTGTCTCCAATGGGGGTAAGGGCGCACTTTCTGTGGAGGAGAAACCAGTGGATGCTGTGTCCTTTACCGCTGAAGGTAATGTGGAAGTGGTGAAACTTTCTCCTGAAAATGGAAACGTGGAGTTGATGTCTTATCCAGACTTGGTAACACTATGTAAAGAGATGGATGCTGCTGGACTTCACAAATTCATATCTGATAACCGGAAGAACCTTGCTGCTGTAAGGGAGGAAATACCACAAGCATTAAGAGCTGCTCCTAATGCTGCATGTTTAGTTTTAGATTCTCTGGAAGGATTTTACTGTACAGAAGTGTCAAATCAGGATGTAAAGAAGGATGCTAACTTATTGGGTCTTCGCCGAACCTGTATCATGCTGATGGAATGTCTATGTGATTTCCTGAGCAACTCAGATTGTGTTTCTAATGTAATTTCAGAAGATATCAAGGACAGGGCAAAGGCAGTTGCTGAAGAATGGAAACCCAAATTGGATGCTCTTGACATGGATGCTAGCAATGGGAATTCCTTGGAGGCTCATGCATTTTTGCAACTTCTAGCCAGTTTTGGTATTGCCTCTGGTTTTAATGAGGAGGAGTTATCCAGGCTAATTCCAATGGTATCTCGACGTCGCCAAACTGCTGATTTGTGCCGTTGCCTTGGGTTGTCAGAGAAGATGCCTGGTGTCATTGAAGTTTTGGTGAATAGTGGGCGGCAAATTGATGCTGTTAACTTGGCTTTTGCATTTGATCTTACAGAACAATTTTCACCCATTCCCTTACTGAAGTCTTACTTGAAGGATGCTAGAAAAGTTGCTTCTCCTGTCAAAAATGTTAACTCAACTCCCACTGCACAGATTGAGGTTAATGAACGAGAGCTGATTGCACTTAAGGCTGTAATTAAGTGCATCGAAGATCATAAACTTGATGAGCAGTATCCTCTGGATCCTCTCCAGAAACGAGTGACTGTGCTCGAGAAGGCTAAGGCTGACAAGAAAAGGGTAACTGAAGCAACAAAGCCTCAACCCAAGAGACCCCGTGCTAATGGTGTGGGGTATGGTCCGCGTGTCACTAACATTCCGTCTGACAGAACTTCCTATGCTAGAGTTGCTGACAGGTATCCTCAATATGTGTATGAACGATCTTACATGTACCCTGGACCAACTGACAATCACTGCCCCCCTCTCATGGGTTCTGCAACTTATAACATCTCTCCTAATCCTGGCAACTACTTTGGAAATGGCTATCAGTACCAAGCTACGTATCTCCACTAG 1638 0.4389 MEDTDSVAMLINSTTSKIQQLQKAFAELESYRAVTLNLKWKELEEHFHGLEKSLKRRFHELEDQEKEFENKTRKAREMLEKQEAAVYAKEQAKLQRLQEKRDAAVFAIVNAREKQRKVSSSELAVVSNGGKGALSVEEKPVDAVSFTAEGNVEVVKLSPENGNVELMSYPDLVTLCKEMDAAGLHKFISDNRKNLAAVREEIPQALRAAPNAACLVLDSLEGFYCTEVSNQDVKKDANLLGLRRTCIMLMECLCDFLSNSDCVSNVISEDIKDRAKAVAEEWKPKLDALDMDASNGNSLEAHAFLQLLASFGIASGFNEEELSRLIPMVSRRRQTADLCRCLGLSEKMPGVIEVLVNSGRQIDAVNLAFAFDLTEQFSPIPLLKSYLKDARKVASPVKNVNSTPTAQIEVNERELIALKAVIKCIEDHKLDEQYPLDPLQKRVTVLEKAKADKKRVTEATKPQPKRPRANGVGYGPRVTNIPSDRTSYARVADRYPQYVYERSYMYPGPTDNHCPPLMGSATYNISPNPGNYFGNGYQYQATYLH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0700 545 Coils Coil 51 114 - -
Ssu2g0700 545 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 3 545 - -
Ssu2g0700 545 MobiDBLite consensus disorder prediction 453 478 - -
Ssu2g0700 545 Pfam Frigida-like protein 169 457 IPR012474 -
Ssu2g0700 545 PANTHER FRIGIDA-LIKE PROTEIN 3 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0700 Ssu-Chr2 38368202 38374234 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0700 - - gmx:100806993 997.267