Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2478 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2479 . . . . Aev04g1279 . . Aip04g01336 . . Amo04g0571 Apr1g2291 . . . . Car01g01115 Cca08g01557 . . . . . Gma09g00499 Gso15g1327 Gso9g0471 . . . . . . . . . . . . Lja6g2139 Mal4g3477 . . . Mtr2g1450 . . . Psa1g3346 . . . . . . . Tpr5g0653 . Tsu07g02383 . . . . . .
Pvu9g2480 . . . . . . . . . . . . . . . . . . . . . . Gma15g01503 . . . . . . . . . . . . . . . . . . . . . . Phco7g02814 . . . . . . . Ssu1g1448 . . . . . . . . . .
Pvu9g2481 . . Adu04g01169 . . Ahy14g1208 Ahy4g1120 Aip04g01335 . Amo14g1707 . . . . . . . Cca08g01561 . . . . . . Gso15g1326 . . . . . . . . . . . . . Lja6g2140 Mal4g3478 . . . Mtr2g1449 . . Prci9g0944 Psa1g3347 . . . . . Ssu1g1446 Sto12g1349 . . Tsu07g02384 . Vifa1g09061 . . . .
Pvu9g2482 . . . . Aev04g1278 . . . . . . Apr1g2290 . . . . Car01g01110 Cca08g01565 . Dod03g1418 . . Gma15g01502 Gma09g00497 . Gso9g0470 . . . . . . Lapu9g00505 Lasa1g01722 . . . . Lja6g2142 Mal4g3480 Mepo6g01628 Mesa5g02962 . Mtr2g1447 . . . . Pste2g03327 Pumo2g01539 Rops11g01687 Seca6g03864 Spst9g02973 Ssu1g1445 . Tpr5g0651 Trre3g02149 Tsu07g02386 Vian4g00233 Vifa1g09069 Vimu10g00311 Viun9g00293 . .
Pvu9g2483 . . . Aed4g0806 Aev04g1277 . . . . . . Apr1g2289 . . . Bva06g00698 . Cca08g01566 . Dod03g1416 . . Gma15g01501 Gma09g00496 Gso15g1325 Gso9g0469 . . . Lan4g0114 . . . . . . . . Lja6g2143 . . . . . . . Prci9g0952 . . . . . . Ssu1g1443 Sto12g1341 . . . . . . . . .
Pvu9g2484 . . Adu04g01166 . Aev04g1274 Ahy14g1207 Ahy4g1119 Aip04g01334 . Amo14g1706 . Apr1g2288 Arst4g01608 . . . . Cca08g01567 . Dod03g1415 . . Gma15g01500 . Gso15g1323 . . . . Lan4g0113 . . . . . . . . . . . . . . . Phco7g02818 . . Pste2g03324 Pumo2g01513 . Seca6g03867 Spst9g02975 . . . . . Vian4g00231 . Vimu10g00309 Viun9g00290 . .
Pvu9g2485 . . . Aed4g0804 . . . . . . . Apr1g2287 . . . . . Cca08g01568 . . . . Gma15g01499 . Gso15g1322 . . . . . . . . . . . . . . . . . . . . Phco7g02819 . . Pste2g03323 Pumo2g01509 . Seca6g03868 Spst9g02976 Ssu1g1442 . . . . Vian4g00230 . Vimu10g00308 Viun9g00288 . .
Pvu9g2486 . . . Aed4g0802 . . . . . . Amo04g0532 Apr1g2286 . . . . Car01g01108 Cca08g01573 . Dod03g1412 . . . Gma09g00492 . Gso9g0467 . . . . . . Lapu9g00510 . . . . . Lja6g2145 Mal4g3494 . . . . . Phco7g02820 . . Pste2g03322 . Rops11g02871 . Spst9g02977 Ssu1g1441 . . . Tsu07g02206 . Vifa1g09081 Vimu10g00307 Viun9g00277 . .
Pvu9g2487 . . Adu04g01148 Aed4g0801 Aev04g1272 Ahy14g1192 Ahy4g1105 Aip04g01318 . Amo14g1685 . Apr1g2285 Arst4g01586 . . . . . . Dod03g1410 . . Gma15g01498 Gma09g00490 Gso15g1320 Gso9g0463 . . . . . . . . . . . . . . Mepo6g01625 Mesa5g02981 . Mtr2g1444 . Phco7g02822 . . Pste2g03319 . . . Spst9g02978 Ssu1g1438 . Tpr5g0649 Trre3g02143 Tsu07g02397 . . Vimu10g00306 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2478 Chr9 35263400 35263660 +
Pvu Pvu9g2479 Chr9 35267126 35269556 +
Aev Aev04g1279 Chr04 8387957 8389156 -
Aip Aip04g01336 Chr04 23950930 23952159 -
Amo Amo04g0571 Chr04 14954173 14956129 -
Apr Apr1g2291 Chr1 32444656 32447048 +
Car Car01g01115 Chr01 11182647 11184152 -
Cca Cca08g01557 Chr08 45869928 45871010 +
Gma Gma09g00499 Chr09 5107631 5110735 -
Gso Gso15g1327 Chr15 13837051 13838783 +
Gso Gso9g0471 Chr9 4880900 4883273 +
Lja Lja6g2139 Chr6 50299727 50301399 +
Mal Mal4g3477 Chr4 102494609 102495972 -
Mtr Mtr2g1450 Chr2 15908465 15911013 -
Psa Psa1g3346 Chr1 292898950 292900733 +
Tpr Tpr5g0653 Chr5 10451966 10452787 +
Tsu Tsu07g02383 Chr07 27165896 27167240 -
Pvu Pvu9g2480 Chr9 35270635 35270953 -
Gma Gma15g01503 Chr15 13937779 13939472 +
Phco Phco7g02814 Chr7 47231561 47232109 -
Ssu Ssu1g1448 Chr1 33411800 33414327 +
Pvu Pvu9g2481 Chr9 35275057 35276258 -
Adu Adu04g01169 Chr04 24821673 24823474 -
Ahy Ahy14g1208 Chr14 25221647 25223617 +
Ahy Ahy4g1120 Chr4 27393749 27395614 +
Aip Aip04g01335 Chr04 23907037 23914871 +
Amo Amo14g1707 Chr14 33302572 33304224 +
Cca Cca08g01561 Chr08 45902297 45903852 -
Gso Gso15g1326 Chr15 13822262 13823817 +
Lja Lja6g2140 Chr6 50301405 50303582 -
Mal Mal4g3478 Chr4 102509357 102518926 -
Mtr Mtr2g1449 Chr2 15902595 15904117 +
Prci Prci9g0944 Chr9 24127196 24129726 +
Psa Psa1g3347 Chr1 292927546 292928914 -
Ssu Ssu1g1446 Chr1 33316772 33318190 +
Sto Sto12g1349 Chr12 8895775 8899696 +
Tsu Tsu07g02384 Chr07 27173229 27174287 -
Vifa Vifa1g09061 Chr1 1435620881 1435622247 +
Pvu Pvu9g2482 Chr9 35288970 35294874 -
Aev Aev04g1278 Chr04 8381053 8386914 +
Apr Apr1g2290 Chr1 32426125 32431809 +
Car Car01g01110 Chr01 11128099 11133633 +
Cca Cca08g01565 Chr08 45974526 45984792 -
Dod Dod03g1418 Chr03 18377422 18382570 +
Gma Gma15g01502 Chr15 13935662 13937588 +
Gma Gma09g00497 Chr09 5055661 5062815 +
Gso Gso9g0470 Chr9 4873607 4879775 +
Lapu Lapu9g00505 Chr9 5664767 5681861 -
Lasa Lasa1g01722 Chr1 159687243 159690373 +
Lja Lja6g2142 Chr6 50309363 50314153 -
Mal Mal4g3480 Chr4 102529091 102534157 -
Mepo Mepo6g01628 Chr6 18039867 18044474 +
Mesa Mesa5g02962 Chr5 53895815 53898562 -
Mtr Mtr2g1447 Chr2 15880947 15886167 +
Pste Pste2g03327 Chr2 33321545 33328723 +
Pumo Pumo2g01539 Chr2 28496679 28502972 +
Rops Rops11g01687 Chr11 26330927 26336313 +
Seca Seca6g03864 Chr6 106206634 106211174 -
Spst Spst9g02973 Chr9 63810080 63824381 -
Ssu Ssu1g1445 Chr1 33314871 33316094 +
Tpr Tpr5g0651 Chr5 10344172 10353547 +
Trre Trre3g02149 Chr3 19179675 19187329 +
Tsu Tsu07g02386 Chr07 27207331 27216752 +
Vian Vian4g00233 Chr4 2393119 2398280 +
Vifa Vifa1g09069 Chr1 1436378910 1436379524 -
Vimu Vimu10g00311 Chr10 2100135 2105504 +
Viun Viun9g00293 Chr9 1959995 1965219 +
Pvu Pvu9g2483 Chr9 35303745 35307164 -
Aed Aed4g0806 Chr4 6959776 6964018 +
Aev Aev04g1277 Chr04 8365940 8370621 +
Apr Apr1g2289 Chr1 32419850 32423081 +
Bva Bva06g00698 Chr06 6720555 6723782 -
Cca Cca08g01566 Chr08 45991549 45995408 -
Dod Dod03g1416 Chr03 18365526 18369543 +
Gma Gma15g01501 Chr15 13929312 13935540 +
Gma Gma09g00496 Chr09 5045570 5050938 +
Gso Gso15g1325 Chr15 13813679 13818069 +
Gso Gso9g0469 Chr9 4864405 4868962 +
Lan Lan4g0114 Chr4 1737911 1741288 +
Lja Lja6g2143 Chr6 50316313 50319789 -
Prci Prci9g0952 Chr9 24199380 24203518 -
Ssu Ssu1g1443 Chr1 33291848 33295750 +
Sto Sto12g1341 Chr12 8821613 8823736 +
Pvu Pvu9g2484 Chr9 35316844 35318704 -
Adu Adu04g01166 Chr04 24800677 24803047 +
Aev Aev04g1274 Chr04 8350106 8353887 +
Ahy Ahy14g1207 Chr14 25212941 25215657 +
Ahy Ahy4g1119 Chr4 27388052 27390600 +
Aip Aip04g01334 Chr04 23898051 23900967 +
Amo Amo14g1706 Chr14 33296769 33299103 +
Apr Apr1g2288 Chr1 32410618 32415752 +
Arst Arst4g01608 Chr4 24829880 24832270 +
Cca Cca08g01567 Chr08 46007470 46009825 -
Dod Dod03g1415 Chr03 18352137 18358448 +
Gma Gma15g01500 Chr15 13901738 13913946 +
Gso Gso15g1323 Chr15 13780995 13802184 +
Lan Lan4g0113 Chr4 1722677 1725207 +
Phco Phco7g02818 Chr7 47269336 47272374 -
Pste Pste2g03324 Chr2 33281652 33285294 +
Pumo Pumo2g01513 Chr2 24748595 24760293 -
Seca Seca6g03867 Chr6 106229167 106230453 -
Spst Spst9g02975 Chr9 63838427 63840340 -
Vian Vian4g00231 Chr4 2377870 2380560 +
Vimu Vimu10g00309 Chr10 2083459 2086999 +
Viun Viun9g00290 Chr9 1942178 1945524 +
Pvu Pvu9g2485 Chr9 35331618 35334740 +
Aed Aed4g0804 Chr4 6949632 6952587 -
Apr Apr1g2287 Chr1 32406411 32409624 -
Cca Cca08g01568 Chr08 46010438 46013400 +
Gma Gma15g01499 Chr15 13888754 13891932 -
Gso Gso15g1322 Chr15 13768384 13771574 -
Phco Phco7g02819 Chr7 47274511 47277457 +
Pste Pste2g03323 Chr2 33274194 33276766 -
Pumo Pumo2g01509 Chr2 23970423 23973046 -
Seca Seca6g03868 Chr6 106231509 106236491 +
Spst Spst9g02976 Chr9 63841068 63843724 +
Ssu Ssu1g1442 Chr1 33250716 33256038 -
Vian Vian4g00230 Chr4 2364370 2377035 -
Vimu Vimu10g00308 Chr10 2079722 2082748 -
Viun Viun9g00288 Chr9 1938797 1941471 -
Pvu Pvu9g2486 Chr9 35335969 35341254 +
Aed Aed4g0802 Chr4 6940543 6943445 +
Amo Amo04g0532 Chr04 13535776 13544607 +
Apr Apr1g2286 Chr1 32401440 32405606 +
Car Car01g01108 Chr01 11059360 11067234 -
Cca Cca08g01573 Chr08 46068726 46074787 +
Dod Dod03g1412 Chr03 18324957 18329606 +
Gma Gma09g00492 Chr09 4971231 4975781 -
Gso Gso9g0467 Chr9 4812020 4816980 -
Lapu Lapu9g00510 Chr9 5719792 5726807 +
Lja Lja6g2145 Chr6 50330907 50336548 +
Mal Mal4g3494 Chr4 102949384 102962409 +
Phco Phco7g02820 Chr7 47280226 47293501 +
Pste Pste2g03322 Chr2 33267598 33272255 -
Rops Rops11g02871 Chr11 50273827 50287258 +
Spst Spst9g02977 Chr9 63847157 63850730 +
Ssu Ssu1g1441 Chr1 33243486 33246635 -
Tsu Tsu07g02206 Chr07 24656195 24661016 +
Vifa Vifa1g09081 Chr1 1437780920 1437783989 +
Vimu Vimu10g00307 Chr10 2072038 2078759 -
Viun Viun9g00277 Chr9 1877175 1882555 -
Pvu Pvu9g2487 Chr9 35345428 35346921 +
Adu Adu04g01148 Chr04 23783422 23784847 -
Aed Aed4g0801 Chr4 6937610 6939082 +
Aev Aev04g1272 Chr04 8335598 8337037 -
Ahy Ahy14g1192 Chr14 24811232 24812909 -
Ahy Ahy4g1105 Chr4 26158326 26159922 -
Aip Aip04g01318 Chr04 23522814 23524239 -
Amo Amo14g1685 Chr14 32954431 32956042 -
Apr Apr1g2285 Chr1 32397257 32398300 -
Arst Arst4g01586 Chr4 23813357 23814900 -
Dod Dod03g1410 Chr03 18307045 18307422 -
Gma Gma15g01498 Chr15 13855129 13856816 -
Gma Gma09g00490 Chr09 4967846 4968211 -
Gso Gso15g1320 Chr15 13736743 13738654 -
Gso Gso9g0463 Chr9 4747431 4750796 +
Mepo Mepo6g01625 Chr6 18019916 18021632 -
Mesa Mesa5g02981 Chr5 54048249 54049472 +
Mtr Mtr2g1444 Chr2 15857858 15858541 -
Phco Phco7g02822 Chr7 47296266 47300132 +
Pste Pste2g03319 Chr2 33229899 33247291 -
Spst Spst9g02978 Chr9 63851542 63853038 -
Ssu Ssu1g1438 Chr1 33100927 33102794 -
Tpr Tpr5g0649 Chr5 10303118 10305036 +
Trre Trre3g02143 Chr3 19127343 19128818 +
Tsu Tsu07g02397 Chr07 27364569 27366053 -
Vimu Vimu10g00306 Chr10 2067870 2069366 -