Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1442 ATGCTGAAGTGCGTCTCGATAAGGTGTATGAGCTTTGAGCGAGACAAAATGTCGTCGTTGTTGAGGTCTAACACTGCAAACTACTCATTGTTGTTGGTGGGTTCAAGAGATATAGTGGATTTGGAAGATGAGAAGGAGAGTGGGAAGGAGATTTCAAGTTTGAATCTTGAACATACcactgcattaaatactcgtAAGGAGAACTTTGCTGTTTATAGTGGTTATAATAGGTTCGAGCTCCAGacGGACAGGGAAGGAGAGGCTGGGCAAACAGTTGCTTATAATTTTTGTGGAAAGAATGGATTACTTAGGATTCTGGTTGGAGGAAGTACCCAGCCAATAGCCATGGCAGCAACTATTCCTTTCTCTCTGCTTAGGAACTGCTCGCCACTGAAACTGGCAACACCTTTCGCTCGCAAAGCCTCCAACTTTAGTCTTCTTCTCCCTCTTCAACCACGCagGTTGGTCTTTAGTACTTTTGCCACGAACAATGAAGAGGCTGCAGCAAAAGCAGCTGCTGTTAATTTTGATAGTGAAACTCCGACAATATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATACGAGGATGAAAAGGTTCTAGCATTTCGAGATATTAATCCACAGGCTCCAGTTCATGTTCTAGTCATTCCGAAATTTAGAGATGGATTAACACAACTTGGGAAGGCTGATAGTAGACATGGGGAAATATTGGGTCAACTTCTCTATGCTGCCAAAATTGTAGCTGAGAAAGAAGGCATCGTTGATGGATTCCGTGTCGTAGTCAACAATGGTCCTAGTGCCTGTCAATCTGTGTATCATTTGCACTTGCATGTATTAGGTGGGAGACAGATGAATTGGCCACCAGGTTGA 882 0.4184 MLKCVSIRCMSFERDKMSSLLRSNTANYSLLLVGSRDIVDLEDEKESGKEISSLNLEHTTALNTRKENFAVYSGYNRFELQTDREGEAGQTVAYNFCGKNGLLRILVGGSTQPIAMAATIPFSLLRNCSPLKLATPFARKASNFSLLLPLQPRRLVFSTFATNNEEAAAKAAAVNFDSETPTIFDKIINKEIPSSIVYEDEKVLAFRDINPQAPVHVLVIPKFRDGLTQLGKADSRHGEILGQLLYAAKIVAEKEGIVDGFRVVVNNGPSACQSVYHLHLHVLGGRQMNWPPG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1442 293 CDD PKCI_related 181 285 - -
Ssu1g1442 293 PANTHER HISTIDINE TRIAD HIT PROTEIN 149 293 IPR001310 -
Ssu1g1442 293 Gene3D - 161 293 IPR036265 -
Ssu1g1442 293 ProSiteProfiles HIT domain profile. 183 293 IPR011146 GO:0003824
Ssu1g1442 293 SUPERFAMILY HIT-like 181 292 IPR036265 -
Ssu1g1442 293 PRINTS Histidine triad family signature 183 199 IPR001310 -
Ssu1g1442 293 PRINTS Histidine triad family signature 204 222 IPR001310 -
Ssu1g1442 293 PRINTS Histidine triad family signature 273 283 IPR001310 -
Ssu1g1442 293 ProSitePatterns HIT domain signature. 266 284 IPR019808 -
Ssu1g1442 293 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 149 293 - -
Ssu1g1442 293 Pfam HIT domain 190 287 IPR011146 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1442 Ssu-Chr1 33250716 33256038 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1442 - - gmx:100500187 317.005