Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2287 ATGGCAGCAACGATTCCTTTCTCTCTCTTTAGAAACTGTTCCACATTCAGATTAGCTACACCTTTCGCTCTCAATCCCTCCACCTTTAATCTTCTTCTTCCTCATCAACCGCCCAGGTTGGTTTTTAGTAGTAGTGCTACAAACAATGAAGAGGCTGCTGCAGCAAAAGCAGCTGCTGTTAATTTTGATAGTGAAGCTCCTACAATATTTGATAAGATCATAAAAAAGGAAATCCCATCAAGCATTGTATACGAAGATGAAAAGGTTCTAGCATTTCGAGATATTAATCCACAGGCTCCAGTTCATGTTCTAGTCATTCCTAAATTTAGAGATGGATTAACACAACTTGGCAAGGCTGAAGGTAGACATGGGGAAATATTGGGTCAACTTCTCTATGCTGCTAAAATTGTGGCTGAAAAAGAAGGTATACTTGATGGATTCCGTGTCGTCATCAACAATGGTCCCAGTGCCTGTCAATCTGTGTACCATCTACACTTGCATGTACTAGGTGGAAGACAGATGAATTGGCCACCAGGTTGA 540 0.4111 MAATIPFSLFRNCSTFRLATPFALNPSTFNLLLPHQPPRLVFSSSATNNEEAAAAKAAAVNFDSEAPTIFDKIIKKEIPSSIVYEDEKVLAFRDINPQAPVHVLVIPKFRDGLTQLGKAEGRHGEILGQLLYAAKIVAEKEGILDGFRVVINNGPSACQSVYHLHLHVLGGRQMNWPPG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2287 179 ProSitePatterns HIT domain signature. 152 170 IPR019808 -
Apr1g2287 179 PRINTS Histidine triad family signature 69 85 IPR001310 -
Apr1g2287 179 PRINTS Histidine triad family signature 90 108 IPR001310 -
Apr1g2287 179 PRINTS Histidine triad family signature 159 169 IPR001310 -
Apr1g2287 179 CDD PKCI_related 67 171 - -
Apr1g2287 179 SUPERFAMILY HIT-like 67 178 IPR036265 -
Apr1g2287 179 PANTHER HISTIDINE TRIAD HIT PROTEIN 35 179 IPR001310 -
Apr1g2287 179 Gene3D - 46 179 IPR036265 -
Apr1g2287 179 Pfam HIT domain 75 173 IPR011146 GO:0003824
Apr1g2287 179 ProSiteProfiles HIT domain profile. 69 179 IPR011146 GO:0003824
Apr1g2287 179 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 35 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2287 Apr-Chr1 32406411 32409624 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2287 - - gmx:100500187 291.197