Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02871 ATGGCATTGCCCAGTCTCGCAAAGCAGCTCCCATCTCCTATTGGTCGTGATTCTTCTTCTCATTATCCGGTTCAACAAAGGAAAATTGTAATAGGTGGTGAAGTGTACGATTATGAGGACCTGGTAAAAATAGATGACGACGATTTCCGCCAGTTAGTAATGGAAGGTAAGTGGGACGCAGTTGCTTACGTGTATCAAAAGAAAAGAAATTTTCACAAGATAAATATAAATCGAAGATGGACCGCATTGCACGTTACTGTGAACACTGGCAACGAGGAAGTTGTGACAAAGCTCGTTGATGCAGTCTTACATCACGAAGGAAATGAAAGGGGTCATGAAAGCGCACTGGCATGCAAGAACGATCAAGGAGCCACTCCTCTGCACCTTGCAGCTCGAAGAGGGTTCACGAGTATATGTAAAAGCATCGTAGGATCTGAAGGGGAAAGGAAGAGTTTGATTCAAGAAAAAGACAATAATGGTGAGACGCCTCTCTTCTGGGCTGCTCAGGATGGCAGAATAGAAACCTACATGTACCTCCAACAATATGTTGCTCCAGGCATAAGAGATTTCAATATTCTGAGAACAAACAAGAATGATACCATCCTTCATGTTGCCATTCGGAGAGAATTTTTCGATTTGGCAACATTCATAATCCGTTGCTATCCTGATATACTTTTCGACATAAGGAACAATGACTATGTTACTCCTCTCGAAGTTCTTGCCACTAAGCCTTCGGCATTCGAGAGTGGAATGAATCTCTCATGGTGGAAGAAAATTCTATATCATTAGAAAGAACAGCATCAAGTATCAATACCGCTAGGCCCATCAGTCCTTAAGACCTCCCTTGATTCTGAAAAAGCAGACAGAGCACGATATACTCTTGTTCCCCCAAATTGGGTTCCCTGCATTCAGTTTGTATACTACTTTCGTAAGTTAGTATTCCGTTGTCTTTGCCTATCACGATTGCGTATCACAGGAGTGGGTATCACAGGAGTAGGTATCACAGGAGTGGCTCCAGATCAAGAGCAAGAGAATAAGGAGACGACATTTTTGGCTGTAGCAAAATCTGGCGTTGCTGAAATAATGAAAGAGCTTAATACTAAAATACGAAGTGCCCCCGAGGACATTGAGAAGGAAGGCTTATTGCTTGTGGCCATGAAGAAAATAAAACATGAAACCGAATCAGTAGAAAAAACTGACAAACAGGAGACAGCATATTTGGCTGCAGCTAGAACTGGCATAGTTGAAATTGTGTCTGAGCTTCAAGATGAAATACCAAGTGTAATCCATGACACTACCTCTAACAATGAAAATGTATTGCTTGTGGCAGTGAAGAATAGGCAACCCCTTGTTGTTGCTGCATTGAAGAAAAAGTTGGACGACAAACAGTTTGAAGGTTTACTATACGAAAACGATGATAAGGGCAATAATGTGGTACACTTAGCAGCAGGTGCAGTAAGAGGCAATGAAAAGACTTGGCAAATAGCTGGTGCTGCCATGCAAATGATGTGGGATATCAAGTGGTATCAGTACGTCAACGGACTAGTGCCGAAGCATTTCGCTGTTAGGATTAACAAAGAAGGTAAAACCCCAGGAGAAATCTTCAAGGAGCAACATGAAGAACTGGTGAAAGAGAGTTCTCAGTGGATGAAGGAAACATCGGAATCTTGCTCGGTTGTGGCGGCACTTATAGCCGGTGTTTCCTTTGCGACAGCGAGCACTGTCCCCGGCGGCACCGAAAATGGTAAACCTGCATTGGAAGGCCAACCTGCATTCGACGTATTCGCTATCGCTTCCCTTGTTGGACTTTGCTTCTCTGTCACTGCACTGATAATGTTCCTTGCTATACTCACTTCTCGAAAACAAGCTGAAGACTTCAAAAGAAGCTTGCCCATTAAACTTCTCTTTGGTTTAAGTTCTCTCTTCATATCCATTGCTTCGATGCTTATTGCATTTTGTGCTGGCCATTTCTTTGTGCTCAAGGACAAATACAAGAGCATTCTATTCCCTATTTATGTTGCCACCTGCTTGCCTGTGTCTTTCTTTGCAGTAGTGCAGTTTCCATTATATGCTGATCTTGTTAAAGCTATTTTCAAGAAGATGCCACCACCACCAAGTGTTAAGGGCGTTCAATTATAG 2139 0.4268 MALPSLAKQLPSPIGRDSSSHYPVQQRKIVIGGEVYDYEDLVKIDDDDFRQLVMEGKWDAVAYVYQKKRNFHKININRRWTALHVTVNTGNEEVVTKLVDAVLHHEGNERGHESALACKNDQGATPLHLAARRGFTSICKSIVGSEGERKSLIQEKDNNGETPLFWAAQDGRIETYMYLQQYVAPGIRDFNILRTNKNDTILHVAIRREFFDLATFIIRCYPDILFDIRNNDYVTPLEVLATKPSAFESGMNLSWWKKILYH*KEQHQVSIPLGPSVLKTSLDSEKADRARYTLVPPNWVPCIQFVYYFRKLVFRCLCLSRLRITGVGITGVGITGVAPDQEQENKETTFLAVAKSGVAEIMKELNTKIRSAPEDIEKEGLLLVAMKKIKHETESVEKTDKQETAYLAAARTGIVEIVSELQDEIPSVIHDTTSNNENVLLVAVKNRQPLVVAALKKKLDDKQFEGLLYENDDKGNNVVHLAAGAVRGNEKTWQIAGAAMQMMWDIKWYQYVNGLVPKHFAVRINKEGKTPGEIFKEQHEELVKESSQWMKETSESCSVVAALIAGVSFATASTVPGGTENGKPALEGQPAFDVFAIASLVGLCFSVTALIMFLAILTSRKQAEDFKRSLPIKLLFGLSSLFISIASMLIAFCAGHFFVLKDKYKSILFPIYVATCLPVSFFAVVQFPLYADLVKAIFKKMPPPPSVKGVQL* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02871 711 SMART ANK_2a 400 430 IPR002110 GO:0005515
Rops11g02871 711 SMART ANK_2a 159 192 IPR002110 GO:0005515
Rops11g02871 711 SMART ANK_2a 122 151 IPR002110 GO:0005515
Rops11g02871 711 SMART ANK_2a 78 107 IPR002110 GO:0005515
Rops11g02871 711 SMART ANK_2a 197 226 IPR002110 GO:0005515
Rops11g02871 711 SMART ANK_2a 434 463 IPR002110 GO:0005515
Rops11g02871 711 Pfam Ankyrin repeats (3 copies) 72 143 IPR002110 GO:0005515
Rops11g02871 711 PANTHER CASKIN 77 698 - -
Rops11g02871 711 Gene3D - 43 255 IPR036770 -
Rops11g02871 711 Gene3D - 333 552 IPR036770 -
Rops11g02871 711 Pfam Domain of unknown function 547 658 IPR026961 -
Rops11g02871 711 SUPERFAMILY Ankyrin repeat 51 456 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02871 Rops-Chr11 50273827 50287258 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02871 81 219 Miscellaneous Gene Families AT5G50140 29.333 8.90e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02871 - - gmx:100813041 682.174