Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01573 ATGATTGATGCAGACAATAGGCTATTAAACGCTGCAATAACAAAGGAATGGGGTACACTACTTCATGTTGTGGCAGGAACAAAGCATGTTCACTTTGTTGATAAGCTGCTTAAATTACTAAACCCAAATGACTTGGAATTGCGAAATTTCAATGGAAACACAGCGTTCTGCTATGCTGTTGCATCTGGAAACCTGCAAATTGCAGCTATTATGATGAAGAAAAATCCATGCCTAGCAAAAATAAGGGGTGGAGAAGAAGCCACTCCTCTTTACATGGCTGTCTTACAGAGAAAAGGTGACATGGCAAGGCATCTCTACCCACTGAGTAGAGACATTTTGGGAGAAGATGACTGGACTACACTGTTCTTCCTTTGCATCAAGAATGATTTGTATGATCTTGCTTTGCAAATGTTACGAGAACAGTCAATGCTAGCATTGGCCCGGGATGAGTATGATGAGACAGGCTTGCATATCTTGGCTCGAAAGCCTTGTGATTTAAGTTCTCCAGGTCAATGGTATCTTCAAAGCAAGATCATGAACTCTAGCTTGGACCCAACTCCATTCGTTCAACTTGTTGGGTGTCTTTGGAGCATGCTTCTCGATCAAGATTTCGATGAAATGGAGATGAGGACGTTCATAAGTCGACCAACACAAATAACATTTGATGCTACAGAAGTTGGAAATTTTCACTTTGTAGCTACGCTTATGAGGTCTTACCCTGATTTATTGTGGGAAGTGGATGCCAAAAATCGAAGCATAATGCACATGGCTGTTGTACATCGCCATTCAACCATCTTCAGCCTAATACATGAACTAGGCTCCTTCAAAGATTTCATAGCAACTTTTGAGGACGACCAAGGAAACAACATATTGCATTATGCTGCTAAATTGACACCTTCTAATAAGCTTAGGTTCATTTCTGGTGCAGCTCTTCAAATGACACATGAATTACTATGGTTTGAGGAGGTGAAGAAAATAATGCTTCTACAAGATACAGAGAAGAAAAATGCTGAAGGCAAAACTCCTAGTGAAATATTTGCTGAGGAGCACAAAGAGTTATTGACAAAGGCAGAGTCATGGACCAAGAGCACAGCAAATAATTGCATGCTTGTTTCTACACTCATAACCGCAGGAGTGTTCACAGCCACATTTATAATACCTGGAGGCAACAATAAAAGTTCAGGAACTCCAAACTATTTCCAGAAAGCAGCATTTCATGTTTTTGCAGTATCAGTTGCATGTGCACTGATATCAGCAGTGGCCTCCATTCTAATGTTCTTGTCAATCCTCATTTCAAGTTATGCTCAAGATGATTGCTTCAAGACTCTCCCTTTCAAGTTGCTATTTGGAATGGTGGCACAAATCATCTCCATCACTAGCATGATGGTAGCATTTAGTGCTGCTTTTTACACAACGTATTCCATTGGTTTAACGTGGGTTCCAATTTTTATTTCTGTGCTTTCATTTCCTCCTATACCCTTGTTCACATTTCTTATATTTCCACTTTGGTCAGATATTTTCCACTCATCTTACTTTTGTATGTATCTATTTAGGCCAAGAAAATAA 1566 0.3972 MIDADNRLLNAAITKEWGTLLHVVAGTKHVHFVDKLLKLLNPNDLELRNFNGNTAFCYAVASGNLQIAAIMMKKNPCLAKIRGGEEATPLYMAVLQRKGDMARHLYPLSRDILGEDDWTTLFFLCIKNDLYDLALQMLREQSMLALARDEYDETGLHILARKPCDLSSPGQWYLQSKIMNSSLDPTPFVQLVGCLWSMLLDQDFDEMEMRTFISRPTQITFDATEVGNFHFVATLMRSYPDLLWEVDAKNRSIMHMAVVHRHSTIFSLIHELGSFKDFIATFEDDQGNNILHYAAKLTPSNKLRFISGAALQMTHELLWFEEVKKIMLLQDTEKKNAEGKTPSEIFAEEHKELLTKAESWTKSTANNCMLVSTLITAGVFTATFIIPGGNNKSSGTPNYFQKAAFHVFAVSVACALISAVASILMFLSILISSYAQDDCFKTLPFKLLFGMVAQIISITSMMVAFSAAFYTTYSIGLTWVPIFISVLSFPPIPLFTFLIFPLWSDIFHSSYFCMYLFRPRK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01573 521 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 5 521 - -
Cca08g01573 521 Gene3D - 3 181 IPR036770 -
Cca08g01573 521 PANTHER CASKIN 5 521 - -
Cca08g01573 521 Gene3D - 219 379 IPR036770 -
Cca08g01573 521 SUPERFAMILY Ankyrin repeat 13 297 IPR036770 -
Cca08g01573 521 SMART ANK_2a 85 114 IPR002110 GO:0005515
Cca08g01573 521 SMART ANK_2a 249 278 IPR002110 GO:0005515
Cca08g01573 521 SMART ANK_2a 16 44 IPR002110 GO:0005515
Cca08g01573 521 SMART ANK_2a 51 80 IPR002110 GO:0005515
Cca08g01573 521 Pfam Domain of unknown function 359 471 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01573 Cca-Chr8 46068726 46074787 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01573 - - gmx:100813731 763.451