Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2145 ATGGATACAGTGGTAAATGGCAACTCAGCAACATCTCCACAAGCACATGTGGTTCATATTGCTTCTGCTCAAATTGATAGCCCTTCACGTGACCTAATACAAGATCCAAGGAAATACTTTGACCAATGTGTACCTCTTTATAAGCTAGCACTGAGAGGTGATTGGAATGCAGCCAAAACTATGATAAATGAAGACAGTTTGTTGCTCAATGCTGCTATAACAAGGGATCGGGGGACACTACTTCATGTTGTAGCAGGAACAAAACATGTTCACTTTGTCAATGAACTGGTTAAAATGCTTAGAGAACAGGACCTGGAACTGCAAAACTCCAATGGAAACACAGCACTATGTTTTGCTGCTGCATCTGGAAATTTGCAAATTGCTACCATGATGATCAAGAAAAGGGAATCCCTACCAAAAATCAGGGGTGGAAGTGGAATGACACCTCTTTACATGGCTGCCTTAAATGGAAGAAGTGACATGGCAAGGTACCTTTATCCCAAGACTAGTGACATATTAGAAGAAGAGGAGCAGAATGCATTGTTCTTCCTCACTATCAAGCATGATATGTATGATTTATGTTTGCAGATGCTACAAAAACAGCCAATGCTGGCATTTATCCGGGATGAGAACAATCAAACAGGTTTGCATGTCTTGGCTCGAAAGCGCTTTAGCTATAGAGGCCAATGGTGTATTCAAAACCAGGTCATGAACTCTAGTACACAGTCAACTCTGTTCCTCCAACTTGTTGGGTGTCTTTGGGGGGTGATTCTCAATCATGATTGCATAGAAACAAAGAGGACAATCATGAATCAACCATCACAGTTAATATTTGATGCTACAGAAACTGGAAATTTTGAGTTTGTGGTTGAGCTTATGAGGTCTGACCCTGATTTAATTTGGGAAGTGGATTGCAAAAACCGAACCATATTTCACATTGCTGTTCTGCATCGCCATTCAAGCATCTTCAGTCTGATTCATGAACTAGGCTCCTTCACCGAGTTGATTGCACCTCATCCGGATGAAGAAGAAAACAACATATTGCATTCTGCTGCAAAGTTAGCACCTTCCAATCAGCTTAACTTAATTTCTGGAGCAGCTCTTCAAATGACACATGAATTACTATGGTTTGAGGAGGTGAAGAAGTTAATGCTGCCATCATATATACAGCAGAAAAATTCTAATCACAAGACTCCTGATGAATTGTTTGTTGAGGAGCATAAAGATTTATTGACAAAAGCAGAGTCATGGACAAAGAACACAGCTATCAATTGCATGCTCATTTCAACACTCATATCCACAGGAGTGCTTACTGCTACATTTAACATACCAGGTGGCAAAAATAAAAGCACAGGAGCTCCTAACTTCTTGCAAAAACCAACATTCCTGTTATTTGCACTATCAAATGCAACTGCATTGATATCATCTTCAGCCTCCATACTAATTTTCTTGTCTGTGCTCATCTCAAGTTATGCAGAGGATGACCATTTCAAGTCACTGCCCTTCAAGTTATTGTTTGGACTGATAGCACAAATCATCTCCATCTCAAGCATGATGATAGCGTTTAGTGTTGCGTTTTTCATAACATATTACCATGGTTTAATATGGGTTCCACCTTTTATTTCTGTCCTTGCGTTTCTGCCAATACCCTTATTCACATTTCTTCTACTTCCACTTTGGTCAGATATCTTCCACTCTTCTTACTTTTGTGTGTATCTATTTCGGCCAAGAAAACATTTACTTAGCTAG 1749 0.3974 MDTVVNGNSATSPQAHVVHIASAQIDSPSRDLIQDPRKYFDQCVPLYKLALRGDWNAAKTMINEDSLLLNAAITRDRGTLLHVVAGTKHVHFVNELVKMLREQDLELQNSNGNTALCFAAASGNLQIATMMIKKRESLPKIRGGSGMTPLYMAALNGRSDMARYLYPKTSDILEEEEQNALFFLTIKHDMYDLCLQMLQKQPMLAFIRDENNQTGLHVLARKRFSYRGQWCIQNQVMNSSTQSTLFLQLVGCLWGVILNHDCIETKRTIMNQPSQLIFDATETGNFEFVVELMRSDPDLIWEVDCKNRTIFHIAVLHRHSSIFSLIHELGSFTELIAPHPDEEENNILHSAAKLAPSNQLNLISGAALQMTHELLWFEEVKKLMLPSYIQQKNSNHKTPDELFVEEHKDLLTKAESWTKNTAINCMLISTLISTGVLTATFNIPGGKNKSTGAPNFLQKPTFLLFALSNATALISSSASILIFLSVLISSYAEDDHFKSLPFKLLFGLIAQIISISSMMIAFSVAFFITYYHGLIWVPPFISVLAFLPIPLFTFLLLPLWSDIFHSSYFCVYLFRPRKHLLS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2145 582 Gene3D - 274 409 IPR036770 -
Lja6g2145 582 SUPERFAMILY Ankyrin repeat 45 331 IPR036770 -
Lja6g2145 582 SMART ANK_2a 76 105 IPR002110 GO:0005515
Lja6g2145 582 SMART ANK_2a 41 71 IPR002110 GO:0005515
Lja6g2145 582 SMART ANK_2a 306 335 IPR002110 GO:0005515
Lja6g2145 582 SMART ANK_2a 145 174 IPR002110 GO:0005515
Lja6g2145 582 SMART ANK_2a 111 140 IPR002110 GO:0005515
Lja6g2145 582 Pfam Ankyrin repeats (3 copies) 81 172 IPR002110 GO:0005515
Lja6g2145 582 Gene3D - 41 246 IPR036770 -
Lja6g2145 582 PANTHER CASKIN 13 581 - -
Lja6g2145 582 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 13 581 - -
Lja6g2145 582 ProSiteProfiles Ankyrin repeat region circular profile. 145 172 - -
Lja6g2145 582 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Lja6g2145 582 Pfam Domain of unknown function 416 528 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2145 Lja-Chr6 50330907 50336548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2145 66 555 Miscellaneous Gene Families AT5G54710 21.771 1.09e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2145 - - gmx:100813731 668.307