Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02977 ATGACAATGCAAATCTCAAGTAAAAAGTTTGACAGAGCACCAAGCATTCGACAGCTATTTCCACCCAAAAATATTGAAGAAAGAAATAGATGTGACCCATGTTCTGTTCAGTTCATCAACCATGAATCTTATACGCCAGAAACCAGAACCCATCAGTGCTATAGTTCAAAACCACTACTCTTAAAAGATGTGGCTCCTAGCCCCAGAAATTCCACATCTTCTATTCCTTCCGATGCCATTGAACATACTGTATCAATACATCAACTAGTTAATCGCTCAAATGCTTCTGCAGTTTCATCATTTCAAGTTGATGATCAATTGGATGTTGAGCACATTAATTCTTCGGAAACCCCCTCGAGTTCATTTCCTGCCTTTCGAGATAGAATGGCAATGAATCTTCACATGTATTTACCCTTATATAGAGCTGCACTGAAAGGAGATTGGGAGAAGGCCAATGAGTTCCTAAATTTGCATCCTGGTGCAGAGAATGCCAGGATTTCAAGAGGGTGGGAAACAGCTCTTCATATTTCAGCTGGGGCTCGACGTACCAAAATTGTGGAGGAGCTGGTCAAAAGAATGGGGAGTACAGACTTGGAAATTCAAAATAAAGATAACAATACAGCACTTTGTTTTGCTGCTGCATCTGGGGTTACCAAGATAGCTAAGCTAATGGTGGAAAGGAATATAAACTTACCTGGCATACGAGGTAGTGAAGGGGTGACACCACTTTATATAGCTACATTACTGGGCCACAGGGACATGGTTTGGTATCTCTATTCAGTGACTGATCATGAGATTCTAAAAACAGAAGACTATTTTAGCCTACTAACCGCTGCTATATCTACAGATTTATATGATTTTGCCTTACATGTATTGGAGTGTCAACCACAATTAGCGACTTATCATGGCTTGAATGGGGAGACAGCTTTGCATGTGTTGGCAAAAAGACCTTCATCATTTACAAGTGGCATTCAACTAGGCATCTGGGAACGATGCATCTATCCATGGATCCAAGTCAACATAACAACGGAGTACAAATGTCAACCAAACAACTCGAAATCCCAGGCACCTTCGACTTCTCAAGATCTATTGATGACTGGACTCAGCCTGGCTGTAAAATATCTTGTGCCAGGATTTGAAACGGTTCAGAAGAAAAAGATATTGAACTCACAGGCTTTAAAGTTAGTTCAACGTCTATGGGAACTAATAGTGTCATCAGACGAAATACGACATGGAGACTTAATTAAAAGCCCTTTGTCACGGCCCCTATTTATTGCTGCTGAATTTGGAATACCTGAGATTGTAATTGAGCTTCTTGACTCATATCCCGACTTACTTTGGAAAGTTGACAGCCAAAATAGAAGTCTTTTTCACATTGCAATCATGTATCGTCAGGAAAAAATATTTAACCTGATTTATGACATAGGGGCACATAAGGATCTGATAACTGCTTACAGAGACAATAACAATCACAACATACTGCATTTGGCTGGAAAACTGCCCCCTACTGATCAACTTCATGTTGTATCTGGTGCAGCACTGCAGATGCAAAGGGAATTATTGTGGTTTAAGGAGGTGGAAAAGATCATACAGCCTCTATTGAAGGAGATTAGGGATTCTGAAGGTAGGACGCCTCAAATGTTATTTACTGAGGAACACAAGGGATTGGCCAGAGAAGGAGAGAAATGGCTGAAGAACACTGCTTCATCATGCATGCTAGTTTCAACACTTATTACCACTGTGATGTTTGCAGCAATCTTTACGGTACCGGGTGGGAACAACAACAATAATGGCTATCCTATTTTTATGAACACTACATCCTTCAAAATCTTTGCTCTCTCAGATGCTCTTGGATTATTCTCCTCAGTAATATCTATATTGATGTTTTTGTCAATACTCACCTCAAGATATGCACAGGAGGATTTCCTTGTGTCACTACCTAAAAGGTTGAGTGTTGGCATTGCGACCCTTTTCTTCTCCATCATTACCATGCTCATCGCTTTTGGTGCAGCATTTTTCATTGTACTTGGCCATCAATTGGTATGGATTGTCATTCCAACAACCCTTGTTGCATGTATCCCAGCAATATTGTTTGCCTTTTTACAGTTTCCTCTTCTTGTTGATACAATCTCTTGTACATATGGAGCTGGTGTATTTGCTCGTTGA 2166 0.403 MTMQISSKKFDRAPSIRQLFPPKNIEERNRCDPCSVQFINHESYTPETRTHQCYSSKPLLLKDVAPSPRNSTSSIPSDAIEHTVSIHQLVNRSNASAVSSFQVDDQLDVEHINSSETPSSSFPAFRDRMAMNLHMYLPLYRAALKGDWEKANEFLNLHPGAENARISRGWETALHISAGARRTKIVEELVKRMGSTDLEIQNKDNNTALCFAAASGVTKIAKLMVERNINLPGIRGSEGVTPLYIATLLGHRDMVWYLYSVTDHEILKTEDYFSLLTAAISTDLYDFALHVLECQPQLATYHGLNGETALHVLAKRPSSFTSGIQLGIWERCIYPWIQVNITTEYKCQPNNSKSQAPSTSQDLLMTGLSLAVKYLVPGFETVQKKKILNSQALKLVQRLWELIVSSDEIRHGDLIKSPLSRPLFIAAEFGIPEIVIELLDSYPDLLWKVDSQNRSLFHIAIMYRQEKIFNLIYDIGAHKDLITAYRDNNNHNILHLAGKLPPTDQLHVVSGAALQMQRELLWFKEVEKIIQPLLKEIRDSEGRTPQMLFTEEHKGLAREGEKWLKNTASSCMLVSTLITTVMFAAIFTVPGGNNNNNGYPIFMNTTSFKIFALSDALGLFSSVISILMFLSILTSRYAQEDFLVSLPKRLSVGIATLFFSIITMLIAFGAAFFIVLGHQLVWIVIPTTLVACIPAILFAFLQFPLLVDTISCTYGAGVFAR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02977 721 Gene3D - 126 327 IPR036770 -
Spst9g02977 721 PANTHER CASKIN 167 715 - -
Spst9g02977 721 Gene3D - 386 554 IPR036770 -
Spst9g02977 721 FunFam Ankyrin repeat-containing protein ITN1 isoform C 386 558 - -
Spst9g02977 721 SUPERFAMILY Ankyrin repeat 138 341 IPR036770 -
Spst9g02977 721 Pfam Ankyrin repeats (3 copies) 139 230 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 238 268 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 204 233 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 452 481 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 169 198 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 418 447 IPR002110 GO:0005515
Spst9g02977 721 SMART ANK_2a 134 163 IPR002110 GO:0005515
Spst9g02977 721 SUPERFAMILY Ankyrin repeat 422 501 IPR036770 -
Spst9g02977 721 Pfam Domain of unknown function 561 674 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02977 Spst-Chr9 63847157 63850730 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02977 413 693 Miscellaneous Gene Families AT3G12360 24.695 6.48e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02977 - - gmx:100814269 1255.35