Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g01567 | ATGCAAGTCTCTTCAATCTGCATCCCAACCAAGGTTCCGATTCGCGTGAAGTCACTACACACAAACCCAGCAACCTTAAACGACACCACTTCCACGGTGGTTGCTCCTAAATGGGCTCAAAAGACAATAACTTTGCCTCCCCTTAAACGTGGGTGTCATCATATCACTTCCAAGATTTTGAAAGAAATTGGTCCAGAATTGTCTGGATTCAAGTGTGGCTTGGCCCATCTATTCTTGCATCACACAAGTGCTTCTCTTACCATCAATGAGAATTATGATTATGATGTTCGCGTTGATACAGAAACGTTCCTCAATCGTATAGTTCCAGAGGGGCCATCTGCACCTTGGAAGCATACTCTAGAGGGACCAGATGACATGCCTGCGCATATTAAATCGTCGATGTTTGGTTGTGCACTCATGATACCAGTTACAAATGGAAAGCTTAATATGGGGACATGGCAGGGTATATGGATTTGTGAGCATCGAGATTATCCTACACCACGTACAGTTGTGGTCACACTTAATGGAGTATGA | 534 | 0.4401 | MQVSSICIPTKVPIRVKSLHTNPATLNDTTSTVVAPKWAQKTITLPPLKRGCHHITSKILKEIGPELSGFKCGLAHLFLHHTSASLTINENYDYDVRVDTETFLNRIVPEGPSAPWKHTLEGPDDMPAHIKSSMFGCALMIPVTNGKLNMGTWQGIWICEHRDYPTPRTVVVTLNGV | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g01567 | 177 | PANTHER | - | 25 | 177 | - | - | |
| Cca08g01567 | 177 | PANTHER | UNCHARACTERIZED PROTEIN YJBQ-RELATED | 25 | 177 | IPR001602 | - | |
| Cca08g01567 | 177 | Gene3D | - | 27 | 176 | IPR035917 | - | |
| Cca08g01567 | 177 | TIGRFAM | TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme | 49 | 176 | IPR001602 | - | |
| Cca08g01567 | 177 | Pfam | Uncharacterised protein family UPF0047 | 55 | 173 | IPR001602 | - | |
| Cca08g01567 | 177 | SUPERFAMILY | YjbQ-like | 37 | 176 | IPR035917 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g01567 | Cca-Chr8 | 46007470 | 46009825 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g01567 | - | - | vra:106755191 | 337.035 |