Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09081 ATGGATTCAACCATGAGCATCGTTAAAAGTCGATCCATTTCGAAGCCACCATATTTTGATGGTAAAAATTGCACTGAATGGAAGAAGAGTATGATGATATTTATGAAATCAAATGACTTCAATGTTTGGCTTGTGACTAAGAATGGGCAAAAAATTCCAAAAAAAGTAATAAATGGTGAAGAAATTGAGAAATCTGAAGATGAATTAGATGATAAAGATATGAAGATGATGGAACAAGAAGCAAAAGCCAAACATATTTTATGTTGTGCTTTAAATCCAGATGATCTTTTAAGAGTTTCAAGTTTCCATACAGCTAAGGAAATGTGGGATGAGCTTGACAAGGAAGTTTCAACACCTAATGTCGATTCTATAACTGTAGTATCACAAGAAGAAACGCCTGCATTAGCAACAGAACTCAACTATCCTAACTTTGAATTTTTGGAAGAACCAAGTAATGATCTAGAGAAAAAGTTTCTCAAACTTTGTATCCCCATTCACAAGTTTGCTTTAGAAGGGAACTGGCCCGCAGCCAAGAGGCTTATAGACAAAGAAAATAAGCTGAAAAATGCTGCCATAACAAATGGGTGGCCTACACTACTGCATACTGCAGCAGCTGGAAACATAGAAATTGTTAACTTATTGCTGGAAAGGAACGAGTTGTTACCGATAATAAGAGGTGTAAATGGAAATACTCCTATTCAGTATGCTGCTTTGCAAGGAAGATACAAAATGACATGGCATTTATATGATAAAACCATACGTTGTTTTCAAGAGAAGGATTGGAATTTATTGTTCTTTGCTTGTATCTACACTGGTATCTATGACTTAGCCTTGAAAATGGTAAGAGATAGGAATGCACTAGCTTTTGCACGCGATGCAAATGAAGAGACAGCTTTACATGTGTTGGCTCAAAGTCAAATACCTTTGGATTCTTGTAGTCATAATCAAAAACATGATGAGAATCCCATCATGATCAATCCTGACATGAAAAAACACGTGGTTTTCCAATTGGTTAAATTTCTTTGGACCACTATTGTTGCTCGGTACTATCACTCAAAGCTAGAGTTAGGAAAAATCAGAAATGAACCTTCCCAACTAATATTTGATGCTGCAAAAGTTGGAAATTTTGGGTTCTTATCAGAGCTTATTAGTGGTTATCCTAGCTTGATATGGGACGTGGATAGCAAAAACCGAACTATATTACACATAGCTGTTTTGCATCGTCATGCTAGTATCTTCAACCTTGTACATAAAATAGGGCATATAAAGGGTGTCATAGTGACATATGAAGATGAAGAAGGAAACACTTTATTGCACTTGGCTGCAACATTAGCACCACAAAGTCAACTTGAATTGGTTTCTGGAGCTGCTTTTCAAATGTGCCTAGAATTATTATGGTTTGAGAAAGTAAAAGAGATAATGATACCAGCACAAATAAAGTGGAGAAATTCTAAAGATTTAACTGCGCAAGAGCTATTCTCAAAGGAGCATGAAAAACTAAGAAAAAATGGAGAGCAGTGGATGAAAAAAACTGCTGAGTCTTGTATGCTAATTTCAACTGTCATTGCTACCGGAGTTTTCGCTGCTGCAACTAGTTTACCAGGAGGAACAAATGATGACACTGGAAAACCAAACTATTTGTCTAAAACATCATTTGCGGTGTTTGCATTATCAGATGCATTGGCACTCATCTCATCTTCAACTGCGATATTGATCTTCCTGTCTATTCTTGTCTCACGCTATAGAGAGTATGATTTTTATAAATCATTGCCTTTAAAGTTAATATTTGGATTGATCGCATTATTCATTTCCATAACAAGCATGATGGTAGCATTTAGCAGTGCCTTCTTCATTATATACTACCATGGTTCAAAGTGGGTTCCTAGTTCCATTGCATTGCTTTCTTTTCTCCCAATACTTTTGTACATAGGTTTGCAGTTTTCGTTGTTTTCGGATATTATTTACTCAACCTACTATTGGAGGATGCTTTCTAAGCCAGGTAAAAATATGATTTATGTACTCAAGGAGTAG 2031 0.3594 MDSTMSIVKSRSISKPPYFDGKNCTEWKKSMMIFMKSNDFNVWLVTKNGQKIPKKVINGEEIEKSEDELDDKDMKMMEQEAKAKHILCCALNPDDLLRVSSFHTAKEMWDELDKEVSTPNVDSITVVSQEETPALATELNYPNFEFLEEPSNDLEKKFLKLCIPIHKFALEGNWPAAKRLIDKENKLKNAAITNGWPTLLHTAAAGNIEIVNLLLERNELLPIIRGVNGNTPIQYAALQGRYKMTWHLYDKTIRCFQEKDWNLLFFACIYTGIYDLALKMVRDRNALAFARDANEETALHVLAQSQIPLDSCSHNQKHDENPIMINPDMKKHVVFQLVKFLWTTIVARYYHSKLELGKIRNEPSQLIFDAAKVGNFGFLSELISGYPSLIWDVDSKNRTILHIAVLHRHASIFNLVHKIGHIKGVIVTYEDEEGNTLLHLAATLAPQSQLELVSGAAFQMCLELLWFEKVKEIMIPAQIKWRNSKDLTAQELFSKEHEKLRKNGEQWMKKTAESCMLISTVIATGVFAAATSLPGGTNDDTGKPNYLSKTSFAVFALSDALALISSSTAILIFLSILVSRYREYDFYKSLPLKLIFGLIALFISITSMMVAFSSAFFIIYYHGSKWVPSSIALLSFLPILLYIGLQFSLFSDIIYSTYYWRMLSKPGKNMIYVLKE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09081 676 PANTHER CASKIN 193 659 - -
Vifa1g09081 676 SMART ANK_2a 194 223 IPR002110 GO:0005515
Vifa1g09081 676 SMART ANK_2a 228 257 IPR002110 GO:0005515
Vifa1g09081 676 SMART ANK_2a 396 425 IPR002110 GO:0005515
Vifa1g09081 676 SMART ANK_2a 160 189 IPR002110 GO:0005515
Vifa1g09081 676 Pfam Domain of unknown function 506 618 IPR026961 -
Vifa1g09081 676 SUPERFAMILY Ankyrin repeat 367 443 IPR036770 -
Vifa1g09081 676 Pfam Ankyrin repeats (3 copies) 166 251 IPR002110 GO:0005515
Vifa1g09081 676 Gene3D - 359 501 IPR036770 -
Vifa1g09081 676 Gene3D - 144 308 IPR036770 -
Vifa1g09081 676 SUPERFAMILY Ankyrin repeat 157 304 IPR036770 -
Vifa1g09081 676 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09081 Vifa-Chr1 1437780920 1437783989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09081 374 646 Miscellaneous Gene Families AT1G10340 22.321 1.36e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09081 - - mtr:25488245 762.296