Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00277 ATGGACACCGTACATGCGAACCCTGCATCGTCATCACCACAAACACATGTTGTTCAGATTGCTTCAGCTGATCAACTTCCACACCCTTCTCGTCACATTCTTCAAGATAGAAGTGAATACTTGCAGAAATGTGTACCCCTTTATAAGCTAGCACTGAGAGGTGATTGGAATGAAGCCAAGCGCATGATAGATGAAGACACTAGTCTCTTAAACGCAGCCATAACAAGGGAATGGGGTACACTACTTCACGTTGTGGCAGGAACAAACCATGTTCACTTTGTGAATCAATTGGTTAAGTTACTTAACCCAGGTGATCTGGAACTGCGAAATTTCAATGGAAACACAGCGTTTTGCTACGCTGCTGCATCTGGAAACATGGAAATTGCTGCTACGATGATCAAGAAAAATGAAGGCTTACCCAAAATCAGGGGCGGAGCAGAAGCCACTCCTCTTTACATGGCTGTCTTGCAGGGAAAAGGTGAAATGGCAAGGCATCTTTACCCTCTCAGTACCAACATTTTAGAAGAAGATGACTTCACCATGCTGTTCTTCCTCTGCATAAAAACTGAGTTGTATGATATAGCTTTGCAAATTGTACAAGAACACCCAATGCTGGCATTGGCAAGGGATGAGAACAACGACACAGGCTTGCATCTCTTGGCTCGAAAGACTTGTTGTGGTTTTAGTGTTCGTGGTGAATGGTATCTTCCAAACCAGATCTTGAACTCTGGCATGAAGGCAACTCCATTCGTCGAACTTGTTGAGCGTCTTTGGAGAATTCTTTTCGACCAAGATTACGATGAAACAGAGTTGAGGGCTTTCATAAGTCATCCATCACAAATAACATTTGATGCTGCACAAGTTGGAAATTTTGAATTCTTAGATACACTTATGAGGTCATACCCTGATTTATTATGGGAAGTGGATCAAAGAAACCGAACCATAATTCACATTGCTGTTCTCCACCGCCATTCAAAAATCTATAGTTTAATACACGGACTAGGCTCCATCAAAGATTTCATAGCAACTTTTGAGGACGATGAAAGAAACAACATATTGCATTATGCTGCTATGTTGTCACCTCCAGACAAACTCAGCTTAATTTCTGGAGCAGCTCTTCAAATGACACATGAATTACTATGGTTCCAGGAGGTGAAGAAAATAATGCTGCTGTTAAATATAGAGAAGAAAAACGGTGAAGGCAAAACTCCTCGTGAAATATTTGCTGAGAAGCACAAAGAACTATTATCAAAGGCAGAATCATGGACAAAGAGCACAGCCATTAACTGCATGCTTGTATCTGCACTCATAACCACAGGAGTTTTCACTGCTACATTTATGGTACCTGGTGGCAACAACAAAAAAACAGCAAATCCTAACTATTTGCAGGAACAAGCATTCCTCGTATTTTCATTATCAGTTGCATGTGCACTGATATCAGCATCAGCTTCCATACTAATGTTCTTGTCCATCCTCATTTCAAGTTATGCAGAGGATGAATGTTTCAAGTCCCTCCCTTACAAGTTACTCTTTGGTATGGCCACACAAATCATCTCCATCACAACCATGATGATATCGTTCGGTGCTGCTTTTTACATAACATTTTCTCATGGTTTAACGCGGGTTCCGTTTTCTATTTTCGTGCTTTCGTTTCTGCCATTACCCTTGTTCAAACCACTGTGGTCAGATATTATTTATTCTTCTTATCTTTGTATGTCTCTATTTTGA 1728 0.408 MDTVHANPASSSPQTHVVQIASADQLPHPSRHILQDRSEYLQKCVPLYKLALRGDWNEAKRMIDEDTSLLNAAITREWGTLLHVVAGTNHVHFVNQLVKLLNPGDLELRNFNGNTAFCYAAASGNMEIAATMIKKNEGLPKIRGGAEATPLYMAVLQGKGEMARHLYPLSTNILEEDDFTMLFFLCIKTELYDIALQIVQEHPMLALARDENNDTGLHLLARKTCCGFSVRGEWYLPNQILNSGMKATPFVELVERLWRILFDQDYDETELRAFISHPSQITFDAAQVGNFEFLDTLMRSYPDLLWEVDQRNRTIIHIAVLHRHSKIYSLIHGLGSIKDFIATFEDDERNNILHYAAMLSPPDKLSLISGAALQMTHELLWFQEVKKIMLLLNIEKKNGEGKTPREIFAEKHKELLSKAESWTKSTAINCMLVSALITTGVFTATFMVPGGNNKKTANPNYLQEQAFLVFSLSVACALISASASILMFLSILISSYAEDECFKSLPYKLLFGMATQIISITTMMISFGAAFYITFSHGLTRVPFSIFVLSFLPLPLFKPLWSDIIYSSYLCMSLF 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00277 575 Pfam Domain of unknown function 421 533 IPR026961 -
Viun9g00277 575 Gene3D - 41 241 IPR036770 -
Viun9g00277 575 Gene3D - 278 432 IPR036770 -
Viun9g00277 575 SMART ANK_2a 311 340 IPR002110 GO:0005515
Viun9g00277 575 SMART ANK_2a 77 108 IPR002110 GO:0005515
Viun9g00277 575 SMART ANK_2a 112 141 IPR002110 GO:0005515
Viun9g00277 575 SMART ANK_2a 146 175 IPR002110 GO:0005515
Viun9g00277 575 FunFam Ankyrin repeat-containing protein ITN1 isoform C 245 417 - -
Viun9g00277 575 SUPERFAMILY Ankyrin repeat 284 365 IPR036770 -
Viun9g00277 575 PANTHER CASKIN 75 569 - -
Viun9g00277 575 Pfam Ankyrin repeats (3 copies) 82 167 IPR002110 GO:0005515
Viun9g00277 575 SUPERFAMILY Ankyrin repeat 46 221 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00277 Viun-Chr9 1877175 1882555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00277 79 537 Miscellaneous Gene Families AT1G34050 23.913 1.99e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00277 - - gmx:100813731 800.816