Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01568 ATGGCAGCAACCATTCCTTTTTCTCTGCTGAGGAACTTCTCGCCGTTGAAACTAGCAACACCTTTCGTTCGCAAAGTCTCCAACTTCAATCTTCTCCCTCTTCAACCACGCAGGTCGGTCGTTAGTACCCGTGCATTGAACAATGAAGAGGCTGCAGCAAAAGCAGCTGCTGTTAATTTTGATAGTGAAGCTCCGACAATATTTGATAAGATCATAAGTAAGGAAATCCCTTCTACCATTGTTTATGAAGATGAAAAGGTTCTTGCATTTCGTGACATTAATCCACAGGCTCCGGTTCATGTTCTCGTCATTCCAAAATTAAGAGATGGATTAACACAGCTTGGGAAGGCTGATAGTAGACATGGGGAAATATTGGGGCAACTTCTCTATGCTGCCAAAATAGTAGCTGAGAAAGAAGGTATTGTCGATGGATTCCGAGTCGTCATCAACAGTGGTCCTAGTGCCTGTCAATCTGTGTATCATCTGCACTTGCATGTATTGGGTGGGAGACAGATGAATTGGCCGCCAGGTTGA 534 0.4419 MAATIPFSLLRNFSPLKLATPFVRKVSNFNLLPLQPRRSVVSTRALNNEEAAAKAAAVNFDSEAPTIFDKIISKEIPSTIVYEDEKVLAFRDINPQAPVHVLVIPKLRDGLTQLGKADSRHGEILGQLLYAAKIVAEKEGIVDGFRVVINSGPSACQSVYHLHLHVLGGRQMNWPPG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01568 177 PANTHER HISTIDINE TRIAD HIT PROTEIN 33 177 IPR001310 -
Cca08g01568 177 ProSitePatterns HIT domain signature. 150 168 IPR019808 -
Cca08g01568 177 Pfam HIT domain 74 171 IPR011146 GO:0003824
Cca08g01568 177 CDD PKCI_related 65 169 - -
Cca08g01568 177 SUPERFAMILY HIT-like 65 176 IPR036265 -
Cca08g01568 177 ProSiteProfiles HIT domain profile. 67 177 IPR011146 GO:0003824
Cca08g01568 177 PRINTS Histidine triad family signature 67 83 IPR001310 -
Cca08g01568 177 PRINTS Histidine triad family signature 88 106 IPR001310 -
Cca08g01568 177 PRINTS Histidine triad family signature 157 167 IPR001310 -
Cca08g01568 177 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 33 177 - -
Cca08g01568 177 Gene3D - 43 177 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01568 Cca-Chr8 46010438 46013400 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01568 - - gmx:100500187 306.99