Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01108 ATGGCTACAGAAGACAACACATCTCGCCAACAACATTTACATAGAGTTGCTTCAGCTCAGCATAGGAGACCTCTCCTCCATTTAGTTTCCACTAAGGAACACAGACATAGATACCTAACCCAATGTGTACCCCTTTACAAAGCAGCTCGAAAAGGGGATTGGAAAGAAGCCAAAAAAATAATAGACCAAGATAAAACATTATTAGTTTCCGCCATAACAAAAGGGTGGGCAACAGTACTCCACATTGCAGTTGGATCAAATCATGTTAACTTTGTTGATGAGTTGGTAAAATTAATGGACCCTAATGATTTGGAATTGAAAGACTACATGGATAACACTGCTTTTTGTTTTGCTGCTGCTGTTGGAAATGTGGAAATTGCTGAAATAATGATGAATAATAGAGGAACTTTGGCATCAATTAGAGGTGGACAAGGTGTTACTCCTCTTTATTTGGCTGCTTTAGAGGGGAAAAATGATATGGCAAAGTATTTGTTTATTAAATCTAAAGAAATGCTAGATGAAAAAGATTGGAGTATGGTGTTCCTCACTTGCATACAGTCTGATCTCTATGATTTAGCTCTAGACATGCTAAATGAGAATGTAACACTAGCTTTTGCTCGTGGAGATAACAATGAGACAGGCTTACATTTATTGGCTCGAAAACATTCGGTTTGCGGTTGTCAAAGTCTTGTGCATCGCAAAAACCCCCTGCATTTATGTAAGAGAGATGGTCCAATCCTAAAGCTCATAAGACGCATGTGGGATGAATTTCTTAACTTAGATGACTCAGAGATGATGGAAGTCATGAGAGAACCATCTCAAGTAACATTTCTTGCTGCAGAGAATGGAAATTTTGAGTTTCTATCAATTGTTATGAGCACTTATCCTGATTTGATATGGGAACTAAATACAACTGGTCAAAGCATAATTCACATGGCTGTTTTGCACCGCCATGCTAGTATCTTCAATTTGATACATGAAATAGGTACTTTCAAAGATTTCATAAGTGCTTTTGTAGATGATAAGGACAATAATTTATTGCATGCTGTTGCAAAGTTAGCACCACCAGATCGACTCAATATAGTTCCTGGAGCAGCTCTTCAAATGATGCTTGAATTGTCATGGTTTGAGGAGGTAAAGAAGATAATGCGACCATCACTAATAGAAATGCAAAATTCCGAAGGATCTACACCTTGTCAACTATTTACGAAAGAACATGAAGAATTGCTCCAAAGAGGAGAGTCATGGATGCAGAGAACAGCAAGTTCTTGTATGGTTGTTTCAACTCTCATTGCTACAGGAGTTTTTTCTGCTCCATTTAGTTTACCTGGTGGAAATAATGATGACACACGATCTCCAAATTATTTGGACAAACCTTCCTTTCTCGTATTTTCTTTATCAGATTCCATGGCACTTATCTCATCTTCAACTTCAGTACTAATTTTTCTGTCTATCCTTATATCGCGATATGCAGAGGAAGATTTTCTCAAGTCATTGCCTTTCAAGTTGCTAGCTGGATTAGTGACATTGTTTGTCTCAATAATCAGCATGATGGTAGCATTTAGTAGTGCCTTCTTTATAACATATTATCATGGTTTGAAATGGGTTCCAAACTTCATTGCTGCCCTTGCATTTTTACCAATACCATTGTTTATTTTCCTACAATTTTCTTTATGGTCTGATATAGTATACTCTGCCTACGTTTGTAGTACTTTATTTAGGCGAGGTAAACCTATGATTCACTAG 1746 0.3723 MATEDNTSRQQHLHRVASAQHRRPLLHLVSTKEHRHRYLTQCVPLYKAARKGDWKEAKKIIDQDKTLLVSAITKGWATVLHIAVGSNHVNFVDELVKLMDPNDLELKDYMDNTAFCFAAAVGNVEIAEIMMNNRGTLASIRGGQGVTPLYLAALEGKNDMAKYLFIKSKEMLDEKDWSMVFLTCIQSDLYDLALDMLNENVTLAFARGDNNETGLHLLARKHSVCGCQSLVHRKNPLHLCKRDGPILKLIRRMWDEFLNLDDSEMMEVMREPSQVTFLAAENGNFEFLSIVMSTYPDLIWELNTTGQSIIHMAVLHRHASIFNLIHEIGTFKDFISAFVDDKDNNLLHAVAKLAPPDRLNIVPGAALQMMLELSWFEEVKKIMRPSLIEMQNSEGSTPCQLFTKEHEELLQRGESWMQRTASSCMVVSTLIATGVFSAPFSLPGGNNDDTRSPNYLDKPSFLVFSLSDSMALISSSTSVLIFLSILISRYAEEDFLKSLPFKLLAGLVTLFVSIISMMVAFSSAFFITYYHGLKWVPNFIAALAFLPIPLFIFLQFSLWSDIVYSAYVCSTLFRRGKPMIH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01108 581 PANTHER CASKIN 3 581 - -
Car01g01108 581 Pfam Domain of unknown function 415 527 IPR026961 -
Car01g01108 581 SMART ANK_2a 144 173 IPR002110 GO:0005515
Car01g01108 581 SMART ANK_2a 305 334 IPR002110 GO:0005515
Car01g01108 581 SMART ANK_2a 75 103 IPR002110 GO:0005515
Car01g01108 581 SMART ANK_2a 110 139 IPR002110 GO:0005515
Car01g01108 581 SMART ANK_2a 40 69 IPR002110 GO:0005515
Car01g01108 581 Gene3D - 32 171 IPR036770 -
Car01g01108 581 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 3 581 - -
Car01g01108 581 Gene3D - 172 424 IPR036770 -
Car01g01108 581 SUPERFAMILY Ankyrin repeat 44 237 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01108 Car-Chr1 11059360 11067234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01108 107 554 Miscellaneous Gene Families AT1G10340 21.442 3.83e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01108 - - gmx:100814409 786.563