Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1441 ATGACAATGCAAATCTCAAGTAAAAAGTTTGACCGAGCACCAAGTATTCGGCGGCTATTTCCACCCAAAAATCTTGAGGAAAGCAATGTATGTGACACATGTTCTGTTCAGTTCCTCAACCGTCAATGTAATACGGCAGAAAGCAGAATCCATCAAGGCTCTAGTTCAAAACCACTTCTGTTAGAAGATGTGGCTCCTAGCCCCAGAGATTCCATATCTTCTATTCCTTCCAATGTCATCGAACATGCTGTATCAATATATCAAGTAGTTGATCAGTCAAGTACTTCTGCAATTTCATCTCTTCAAGTTGATGATCAATTGGATATTGAGCACATTAATTCTTCAGAACCCCCATCAAATTCATTTCCTGCCTTCAGAGATAAAATACCAATGAATCTTCACGTGTATTTGCCCTTATATAGAGCTGCGTTGAAAGGTGATTGGGAGAAGGCAAGTGAGTTCCTAAATTTGCATCCTGGTGCAGAGCATGCCAGGATTTCAAGAGGGTGGGAAACAGCTCTTCATATTTCAGCTGGAGCTCGACGCACCAAATTTGTGGAGGAACTGGTCAAGAGAATGAGAGCTATGGACTTggaaattcaaaataaagataataatactGCACTTTGTTTTGCTGCTGCATCTGGGGTTACCAATATAGCAAAGCTGATGGTGGAAAGCAACAGAAACTTACCTGGAATACGAGGAAGTGAAGGGGTGACACCGCTTTATATAGCTACATTACTGGGCCAAAGGGACATGGTTTGGTATCTCTATTCAGTGACCAATCACGAAATGCTAAATACAGAAGACTACTTTAGCCTATTAATTGCTGCTATATCTACAGATTTATATGATTTTGCCTTACATGTGCTTGAGTGTCGACCACAATTAGCGACTTATCATGGTTTGAATGGCGAGACAGCTCTACATGTGTTGGCAAAAAAACCTTCATCATTTACCAGTGGCATTCAACTAGGAATCTGGGAAAGATGCATCTATCCATGGATCCAAGTCAAACTAAGAACTGACAACAGATGCCAGTTTAACAACTGCAAATCCCAGGTGCCTTCAACTTTTCAGGTTGCAGATAATCTATTGGTGACTGGACTCTGTCAAGCTGTAAAATATCTTGTGCCAGGATTTGAAGCAGTTCAGAAGAAAAAGATATTGAATGCACAGGCTTTAAAGTTAGTGCAACGTCTTTGGGAACTAATAGTGTCTTCAGACGAAATACAACATggagacttaattaaaagcCCTTTGTCACGAGCCCTATTTATTGCTGCTGAATTCGGGATTCCCGAGATTGTAATTGAGCTTCTTTACTCATATCCTGATCTACTTTGGAAAGTTGACAGCCAAAATAGAAGTCTTTTTCACATTGCAATCATGTATCGtcaggaaaaaatatttaacctgATTTATGACATAGGGGCACATAAGGATCTGATAACTTCTTACAGAGACAATAATAATCACAACATACTGCATTTGGCTGGAAAATTGGCCCCTTCAGATCAGCTTCATGTTGTATCTGGTGCAGCACTGCAGATGCAAAGGGAATTATTGTGGTTCAAGGAGGTGGAAAAAATCATACAACCTCTATTCAAGGAGATTAAAGATTCTGAAGGTAGGACAcctcaaatattatttactgAGGAGCACAAGGGGTTGGCCAAAGAAGGAGAAAAGTGGCTGAAGAACACTGCTTCATCATGCATGCTAGTGGCAACACTTATTACTACTGTGATGTTTGCAGCAATCTTTACAGTACCAGGTgggaacaacaacaataatggcTACCCTATTTTTATGCACACTACATCCTTCAAAGTGTTTGCTCTCTCAGATGCTCTTGCATTGTTCTCCTCGGTAATATCTGTATTGATGTTTTTGTCCATACTCACCTCAAGATATGCACAGGAGGATTTCCTTGTGTCACTGCCTAAAAGGTTGAGTGTTGGCATTGCAACCCTTTTCTTCTCCATCATCACAATGCTCATAGCTTTTGGTGCAACTTTCTTCATTGTACTTGGCCATCAATTGGCATGGATTGTCATTCCAACAACCCTTGCTGCTTGTATCCCAGCAATATTGTTTGCCTTTTTACAGTTTCCTCTTCTTGTTGATACAATCTCCTGTACTTATGGAGCTGGCGTATTTGCTCGTTGA 2175 0.389 MTMQISSKKFDRAPSIRRLFPPKNLEESNVCDTCSVQFLNRQCNTAESRIHQGSSSKPLLLEDVAPSPRDSISSIPSNVIEHAVSIYQVVDQSSTSAISSLQVDDQLDIEHINSSEPPSNSFPAFRDKIPMNLHVYLPLYRAALKGDWEKASEFLNLHPGAEHARISRGWETALHISAGARRTKFVEELVKRMRAMDLEIQNKDNNTALCFAAASGVTNIAKLMVESNRNLPGIRGSEGVTPLYIATLLGQRDMVWYLYSVTNHEMLNTEDYFSLLIAAISTDLYDFALHVLECRPQLATYHGLNGETALHVLAKKPSSFTSGIQLGIWERCIYPWIQVKLRTDNRCQFNNCKSQVPSTFQVADNLLVTGLCQAVKYLVPGFEAVQKKKILNAQALKLVQRLWELIVSSDEIQHGDLIKSPLSRALFIAAEFGIPEIVIELLYSYPDLLWKVDSQNRSLFHIAIMYRQEKIFNLIYDIGAHKDLITSYRDNNNHNILHLAGKLAPSDQLHVVSGAALQMQRELLWFKEVEKIIQPLFKEIKDSEGRTPQILFTEEHKGLAKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGGNNNNNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVSLPKRLSVGIATLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLAACIPAILFAFLQFPLLVDTISCTYGAGVFAR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1441 724 SUPERFAMILY Ankyrin repeat 138 501 IPR036770 -
Ssu1g1441 724 PANTHER ANKYRIN REPEAT PROTEIN 86 718 - -
Ssu1g1441 724 Pfam Domain of unknown function 564 677 IPR026961 -
Ssu1g1441 724 SMART ANK_2a 204 233 IPR002110 GO:0005515
Ssu1g1441 724 SMART ANK_2a 238 268 IPR002110 GO:0005515
Ssu1g1441 724 SMART ANK_2a 455 484 IPR002110 GO:0005515
Ssu1g1441 724 SMART ANK_2a 169 198 IPR002110 GO:0005515
Ssu1g1441 724 Coils Coil 186 206 - -
Ssu1g1441 724 Pfam Ankyrin repeats (3 copies) 202 259 IPR002110 GO:0005515
Ssu1g1441 724 Gene3D - 389 548 IPR036770 -
Ssu1g1441 724 Gene3D - 132 325 IPR036770 -
Ssu1g1441 724 PANTHER CASKIN 86 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1441 Ssu-Chr1 33243486 33246635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1441 416 706 Miscellaneous Gene Families AT3G12360 24.179 4.95e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1441 - - gsj:114366966 1304.27