Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00307 ATGACAATGCAAATCTCAGGTAAAAAGTTTGAACGAGCACCAAGCATTCGACAGCTGTTTCCACCCAAAAATCTTGAGGAAAGAAAAGCCCATGAGTGCTATGGTTCAAAACCACTTCTGTTAAAAGATGTGGCTCCTAGCCCCACAAGTTCTACATCTTCTGTTCCTTCCAATGCCCTTGAACATATTGTACCTGTACATCAACAAGTTGATCGCTCAAGTACTTCTGTAATTTCATCTCTTCAAGATGATCAAGAGTACATTTGTTCTTCGGAATCCTCCTCAAGTTCATTTCCTGCCTTTCGAGATAAAAGGCCAATGGATCTTCGCATGTATTTGCCCTTATATAGAGCTGCTTTGAAAGGAGACTGGGAGAAGGCCAATGAGTTCCTAAATTTGCATCCAGGTGCGGAGAATGCCAGGATTTCAAAAGGGATGGAAACAGCTCTTCATATTTCAGCTGGGGCTCGACACACCAAATTTGTGGAGGAACTGGTCAAAAGAATGAGAATTAAGGACCTGGAAATTCAAAACAAAGATAAGAACACTGCACTTTGTTTTGCTGCTGCATCTGGGGTTACCAAGATAGCAAAGCTAATGGTGGAAAGGAATATAAACTTACCTGGAATACGAGGTAGTGAAGGGGTGACACCACTTTATGTAGCCACATTACTGGGCCAAAGGGACATGGTTTGGTATCTCTATTCAGTGACCGATCATGAGATTCTAAAAACAGAAGACTATTTCAGTCTACTGATTGCTGCTATATCAACAGATTTATATGATTTTGCCTTACAAATACTGGAGTGTCGACCACAATTAGCAACTTGTCATGGCTTGAATGGGGAGACAGCTTTACATGTGTTGGCAAAAAAGCCTTCATCCTTTCGTAGTGGCATTCAACTAGACATCTGGGAAAGATGCATCTATCCATGTGGGAATGACACAGTGAAATTTCTTGAAGGGATCCGAGTCAAACTAACAACTGAGTACAAATGCCAGTCAAACAACTCGCAATCCCAGGCGCCTTCAACCTTTCAAGTTGCAGACCTACTGGTGACTGGACTCTGTCGTGCTGTAAAATATCTTGTGCCAGGATTTGAAACAGTTCAGAAGAAAAAGATATTGAACTTACAGGCTTTAAAGTTAGTGCAACATCTTTGGGAAGTAATAGAGTCATCAGACGAAATATATGGAGACTTGATTAAAAGCCCTTTGTCAAGGCCCCTATTTATTGCTGCTGAATTTGGAATACCTGAGATTGTAATTGAGCTTCTTCACTCATATCCCGATCTACTTTGGAAAGTTGACAGCCAAAATAGAAGTCTTTTTCACATTGCAATCGTGTATCGTCAGGAAAAAATATTTAACATGATTTATGAAATAGGGGCACATAAGGATCTGATAACTTCTTATAGAGACAATAACAATCACAACATACTGCATTTGGCAGGAAAATTGGCACCTTCAGATCAACTTCATGTTGTATCTGGTGCAGCACTGCAGATGCAAAGGGAATTATTGTGGTTCAAGGAGGTGGAAAAGATCATACAGCCTCTATTGAAGGAGATGAAGGATTCTGAAGGTAGGACGCCTCAAATGCTATTTACCGAAGAACACAAGGCGTTGGCCAAAGAAGGAGAAAAATGGCTGAAGAACACTGCTTCATCATGCATGCTAGTTTCAACTCTTATTACCACTGTGATGTTTGCAGCAATCTTTACAGTACCAGGTGGGAACAACAACAACAATGGATATCCTATTTTTATGCACACTACATCCTTCAAAGTTTTTGCACTCTCAGATGCTATTGGATTATTCTCATCAGTAGTATCTATATTGATGTTCTTGTCAATACTCACCTCAAGGTATGCACAGGAGGATTTCCTTGTGTCACTGCCTAAAAGGTTGAGTGTTGGCATTGCGACCCTTTTCTTCTCCATCATTACAATGCTCATAGCTTTTGGTGCAACATTTTTCATTGTACTTGGCCATCAATTGGCATGGATTTTCATTCCAATAACCCTTGTTGCATGTATCCCAGCAATATTGTTTGCCTTTTTACAGTTTCCTCTTCTCGTCGATACAATCTCTTGTACATATGGAGCTGGTGTATTTTCTCGTTGA 2127 0.4039 MTMQISGKKFERAPSIRQLFPPKNLEERKAHECYGSKPLLLKDVAPSPTSSTSSVPSNALEHIVPVHQQVDRSSTSVISSLQDDQEYICSSESSSSSFPAFRDKRPMDLRMYLPLYRAALKGDWEKANEFLNLHPGAENARISKGMETALHISAGARHTKFVEELVKRMRIKDLEIQNKDKNTALCFAAASGVTKIAKLMVERNINLPGIRGSEGVTPLYVATLLGQRDMVWYLYSVTDHEILKTEDYFSLLIAAISTDLYDFALQILECRPQLATCHGLNGETALHVLAKKPSSFRSGIQLDIWERCIYPCGNDTVKFLEGIRVKLTTEYKCQSNNSQSQAPSTFQVADLLVTGLCRAVKYLVPGFETVQKKKILNLQALKLVQHLWEVIESSDEIYGDLIKSPLSRPLFIAAEFGIPEIVIELLHSYPDLLWKVDSQNRSLFHIAIVYRQEKIFNMIYEIGAHKDLITSYRDNNNHNILHLAGKLAPSDQLHVVSGAALQMQRELLWFKEVEKIIQPLLKEMKDSEGRTPQMLFTEEHKALAKEGEKWLKNTASSCMLVSTLITTVMFAAIFTVPGGNNNNNGYPIFMHTTSFKVFALSDAIGLFSSVVSILMFLSILTSRYAQEDFLVSLPKRLSVGIATLFFSIITMLIAFGATFFIVLGHQLAWIFIPITLVACIPAILFAFLQFPLLVDTISCTYGAGVFSR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00307 708 Gene3D - 102 343 IPR036770 -
Vimu10g00307 708 SUPERFAMILY Ankyrin repeat 408 491 IPR036770 -
Vimu10g00307 708 SUPERFAMILY Ankyrin repeat 114 290 IPR036770 -
Vimu10g00307 708 SMART ANK_2a 180 209 IPR002110 GO:0005515
Vimu10g00307 708 SMART ANK_2a 145 176 IPR002110 GO:0005515
Vimu10g00307 708 SMART ANK_2a 214 244 IPR002110 GO:0005515
Vimu10g00307 708 SMART ANK_2a 110 139 IPR002110 GO:0005515
Vimu10g00307 708 SMART ANK_2a 439 468 IPR002110 GO:0005515
Vimu10g00307 708 PANTHER CASKIN 143 702 - -
Vimu10g00307 708 Gene3D - 375 546 IPR036770 -
Vimu10g00307 708 Pfam Domain of unknown function 548 661 IPR026961 -
Vimu10g00307 708 Pfam Ankyrin repeats (3 copies) 115 206 IPR002110 GO:0005515
Vimu10g00307 708 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g00307 708 FunFam Ankyrin repeat-containing protein ITN1 isoform C 374 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00307 Vimu-Chr10 2072038 2078759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00307 400 680 Miscellaneous Gene Families AT3G12360 23.765 5.90e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00307 - - gsj:114366966 1150.58