Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1568 . . Adu08g02625 . . Ahy18g2817 Ahy8g2536 Aip08g03206 . Amo08g2206 . . Arst8g03633 Bach2g02374 . Bva06g01649 . . . . . . Gma04g02024 Gma06g01393 Gso4g1764 Gso6g1317 . . . . . . . Lasa5g03393 . . . . . . . . . . . Phco7g01734 . . Pste2g00110 . . . Spst9g01929 Ssu1g2526 . . . . . . Vimu10g01728 . Vivi3g02404 .
Pvu9g1569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1570 . . Adu08g02624 . . Ahy18g2815 Ahy8g2534 Aip08g03205 . Amo08g2205 . . Arst8g03632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01735 . . Pste2g00099 . . . . . . . . . . . . . . .
Pvu9g1571 . . Adu08g02622 . Aev08g2537 Ahy18g2811 Ahy8g2529 Aip08g03199 . Amo08g2199 . . Arst8g03618 . . Bva06g01647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01736 . . Pste2g00094 . . . Spst9g01925 . . . . . . . . . . .
Pvu9g1572 . . Adu08g02618 . Aev08g2535 Ahy18g2809 Ahy8g2525 Aip08g03195 . Amo08g2198 . . Arst8g03615 Bach2g02372 . Bva06g01645 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01737 . . Pste2g00090 . . . Spst9g01922 . . . . . . . . . . .
Pvu9g1573 . . Adu08g02616 . Aev08g2534 Ahy18g2808 Ahy8g2524 Aip08g03193 . Amo08g2197 . . Arst8g03613 Bach2g02371 . Bva06g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01739 . . Pste2g00088 . . . Spst9g01920 . . . . . . . . . . .
Pvu9g1574 . . Adu08g02615 . Aev08g2533 Ahy18g2807 Ahy8g2523 Aip08g03192 . Amo08g2196 . . Arst8g03611 Bach2g02370 . Bva06g01643 . . . Dod09g0009 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01740 . . Pste2g00086 . . . Spst9g01919 . . . . . . . . . . .
Pvu9g1575 . . . . . . . . . . . . . . . . . Cca03g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01741 . . . . . . Spst9g01918 . . . . . . . . . . .
Pvu9g1576 . . . . . . . . . . . . . . . . . Cca03g00220 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01742 . . . . . . Spst9g01916 . . . . . . . . . . .
Pvu9g1577 . . Adu08g02611 . Aev08g2531 Ahy18g2803 Ahy8g2519 Aip08g03188 . Amo08g2192 . . Arst8g03606 . . . . . . Dod09g0817 . . . . . . . . . . . . . Lasa5g03414 . . . . . . . . . . . Phco7g01744 . . . . . . Spst9g01913 . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g1568 Chr9 22062815 22077804 +
Adu Adu08g02625 Chr08 42347956 42353788 -
Ahy Ahy18g2817 Chr18 132445511 132451548 -
Ahy Ahy8g2536 Chr8 48206360 48212292 -
Aip Aip08g03206 Chr08 122781788 122787659 -
Amo Amo08g2206 Chr08 35042764 35048409 -
Arst Arst8g03633 Chr8 46720651 46726461 -
Bach Bach2g02374 Chr2 30085407 30091202 -
Bva Bva06g01649 Chr06 11618373 11624276 -
Gma Gma04g02024 Chr04 50674410 50682628 -
Gma Gma06g01393 Chr06 13163367 13173682 +
Gso Gso4g1764 Chr4 47757885 47766062 -
Gso Gso6g1317 Chr6 12905054 12915228 +
Lasa Lasa5g03393 Chr5 559370784 559375756 +
Phco Phco7g01734 Chr7 17467808 17478817 +
Pste Pste2g00110 Chr2 428757 438861 -
Spst Spst9g01929 Chr9 27457164 27458508 -
Ssu Ssu1g2526 Chr1 69566996 69574988 -
Vimu Vimu10g01728 Chr10 23895017 23897942 -
Vivi Vivi3g02404 Chr3 40459191 40465464 -
Pvu Pvu9g1569 Chr9 22071817 22072294 -
Pvu Pvu9g1570 Chr9 22112839 22118588 +
Adu Adu08g02624 Chr08 42325596 42329207 -
Ahy Ahy18g2815 Chr18 132409453 132423169 -
Ahy Ahy8g2534 Chr8 48161760 48187531 -
Aip Aip08g03205 Chr08 122755573 122759284 -
Amo Amo08g2205 Chr08 35015036 35018867 -
Arst Arst8g03632 Chr8 46698240 46701938 -
Phco Phco7g01735 Chr7 17535098 17540806 +
Pste Pste2g00099 Chr2 365913 367822 -
Pvu Pvu9g1571 Chr9 22120543 22123849 +
Adu Adu08g02622 Chr08 42291544 42292218 -
Aev Aev08g2537 Chr08 24100099 24102749 -
Ahy Ahy18g2811 Chr18 132385802 132388461 -
Ahy Ahy8g2529 Chr8 48131045 48133770 -
Aip Aip08g03199 Chr08 122721083 122721758 -
Amo Amo08g2199 Chr08 34962774 34965493 -
Arst Arst8g03618 Chr8 46662745 46665415 -
Bva Bva06g01647 Chr06 11605527 11606787 -
Phco Phco7g01736 Chr7 17550178 17553923 +
Pste Pste2g00094 Chr2 355028 363475 -
Spst Spst9g01925 Chr9 27388793 27407999 -
Pvu Pvu9g1572 Chr9 22125620 22130047 -
Adu Adu08g02618 Chr08 42277045 42278837 +
Aev Aev08g2535 Chr08 24091748 24096006 +
Ahy Ahy18g2809 Chr18 132360942 132367512 +
Ahy Ahy8g2525 Chr8 48104583 48111201 +
Aip Aip08g03195 Chr08 122681779 122690835 +
Amo Amo08g2198 Chr08 34936357 34943001 +
Arst Arst8g03615 Chr8 46645714 46651985 +
Bach Bach2g02372 Chr2 30059903 30066534 +
Bva Bva06g01645 Chr06 11594236 11598957 +
Phco Phco7g01737 Chr7 17554971 17560071 -
Pste Pste2g00090 Chr2 345337 351086 +
Spst Spst9g01922 Chr9 27354826 27360082 +
Pvu Pvu9g1573 Chr9 22147050 22151176 +
Adu Adu08g02616 Chr08 42258004 42261792 -
Aev Aev08g2534 Chr08 24083671 24087039 -
Ahy Ahy18g2808 Chr18 132344427 132348276 -
Ahy Ahy8g2524 Chr8 48092822 48096644 -
Aip Aip08g03193 Chr08 122657398 122661226 -
Amo Amo08g2197 Chr08 34924514 34927455 -
Arst Arst8g03613 Chr8 46630660 46634487 -
Bach Bach2g02371 Chr2 30051508 30055213 -
Bva Bva06g01644 Chr06 11588398 11592193 -
Phco Phco7g01739 Chr7 17589517 17592482 +
Pste Pste2g00088 Chr2 337679 341423 -
Spst Spst9g01920 Chr9 26971907 26978790 -
Pvu Pvu9g1574 Chr9 22155295 22161050 -
Adu Adu08g02615 Chr08 42250478 42255365 +
Aev Aev08g2533 Chr08 24077019 24082090 +
Ahy Ahy18g2807 Chr18 132338217 132343077 +
Ahy Ahy8g2523 Chr8 48085035 48089895 +
Aip Aip08g03192 Chr08 122651633 122656522 +
Amo Amo08g2196 Chr08 34918350 34922938 +
Arst Arst8g03611 Chr8 46623175 46628078 +
Bach Bach2g02370 Chr2 30046183 30050224 +
Bva Bva06g01643 Chr06 11582056 11586054 +
Dod Dod09g0009 Chr09 264430 270705 +
Phco Phco7g01740 Chr7 17597632 17604511 -
Pste Pste2g00086 Chr2 328232 336106 +
Spst Spst9g01919 Chr9 26965005 26970961 +
Pvu Pvu9g1575 Chr9 22174644 22175105 +
Cca Cca03g00219 Chr03 3215032 3215496 -
Phco Phco7g01741 Chr7 17614534 17614995 +
Spst Spst9g01918 Chr9 26956199 26956660 -
Pvu Pvu9g1576 Chr9 22181193 22181654 +
Cca Cca03g00220 Chr03 3221918 3222382 -
Phco Phco7g01742 Chr7 17620578 17621039 +
Spst Spst9g01916 Chr9 26905320 26905847 -
Pvu Pvu9g1577 Chr9 22182541 22185833 -
Adu Adu08g02611 Chr08 42214072 42215083 +
Aev Aev08g2531 Chr08 24051744 24052700 +
Ahy Ahy18g2803 Chr18 132297579 132299769 +
Ahy Ahy8g2519 Chr8 48049097 48051145 +
Aip Aip08g03188 Chr08 122614208 122615219 +
Amo Amo08g2192 Chr08 34878413 34880339 +
Arst Arst8g03606 Chr8 46586698 46588779 +
Dod Dod09g0817 Chr09 26062392 26063348 -
Lasa Lasa5g03414 Chr5 560668052 560668918 +
Phco Phco7g01744 Chr7 17623482 17624773 -
Spst Spst9g01913 Chr9 26871363 26872256 +
Adu Adu08g02625 Chr08 42347956 42353788 -