Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00220 ATGTCACTGATCCCAAGTTTCTTCGGTGGTCGAAGGAGCAACGTATTCGACCCTTTCTCCTCTCTTGACGTATGGGACCCTTTCAAGGATTTTTCTTTCCCCTCTTCACTTTCTGCTGAAAATTCTGCGTTTGTGAACACTCGAGTGGATTGGAAAGAAACCCCAGAAGCACACGTGTTCAAGGCTGATATTCCAGGGCTGAAGAAGGAGCAAGTGAAGGTAGAGATTGAAGATGGCAACATTCTTCAAATAAGTGGAGAGAGGAACATTGAGAAAGAAGATAACAACGACAAGTGGCATCGCGTGGAGCGTAGCACTGGTAAGTTCTTCAGGAAGTTCAGGCTGCCAGAAAATGCTAAAGTGGAACAAGTTAAGGCTTCAATGGAAAATGGGGTTCTCACTGTCACTGTTCCTAAGGAAGAGGTCAAGAAGCCTGATGTTAAAGCCGTGCAAATCTCTGGTTAA 465 0.4516 MSLIPSFFGGRRSNVFDPFSSLDVWDPFKDFSFPSSLSAENSAFVNTRVDWKETPEAHVFKADIPGLKKEQVKVEIEDGNILQISGERNIEKEDNNDKWHRVERSTGKFFRKFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAVQISG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00220 154 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 1 154 - -
Cca03g00220 154 ProSiteProfiles CS domain profile. 44 148 IPR007052 -
Cca03g00220 154 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 154 IPR002068 -
Cca03g00220 154 PANTHER 17.8 KDA CLASS I HEAT SHOCK PROTEIN-LIKE 1 154 - -
Cca03g00220 154 CDD ACD_ScHsp26_like 48 139 - -
Cca03g00220 154 SUPERFAMILY HSP20-like chaperones 22 154 IPR008978 -
Cca03g00220 154 Gene3D - 10 154 IPR008978 -
Cca03g00220 154 Pfam Hsp20/alpha crystallin family 50 153 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00220 Cca-Chr3 3221918 3222382 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00220 K13993 - gmx:100526893 266.929