Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01393 ATGCTGCACTCTTCAAGTCTACTCTTTCTCTCTCCTTCCACTGGTCCCATCAATGTTATAAACCCTTGCCCCTCTTTCTCTTCTCTCTTCCCTCCCATTACCATGGAATTGGAAGTCACCGCCGCTACTTCTCCACCTTCTCGCGTTCTCCTCATCTCCGCCGGTGCCAGCCACACCGTTGCCCTTCTCTCTGGGAATGTTGTGTGCTCGTGGGGTCGCGGAGAGGATGGACAGTTAGGCCATGGTGACACCGATGATAGACTCTTACCCACTCATCTCAGTGCATTGGATGCTCAACAAATTGATTCTATTGCATGTGGAGCTGATCATACCCTTGCGTATTCCGAATCACGCAATGAACTCTATAGTTGGGGATGGGGTGATTTTGGAAGGTTGGGTCATGGCAATTCTAGTGATTTGCTCATTCCTCAGCCTATTATAGCATTGCAAGGTCTAAGGATAAAGCAAATTGCCTGTGGGGATAGCCACTGTTTGGCAGTTACCATGGAAGGCGAGGTTCAGAGTTGGGGGAGGAATCAAAATGGTCAACTTGGACTTGGCACCTCGGAGGATTCTCTTGTGCCACAAAAGATTCAAACATTTCAGGGAGTACCTATCAAAATGGTTGCTGCAGGTGCAGAACACAGTGTAGCTATTACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCCGATATGGAAATTTGGGGTTGGGGGATAGAAATGATCGCTGGATTCCTGAGAAAGTTTCTTCTGTTGATTGTGACAAGATGGTCATGGTTGCTTGTGGTTGGCGGCATACAATTTCTGTTTCATCTTTGGGTGGCTTATACACATATGGGTGGAGCAAATATGGCCAGTTAGGACATGGAAATTTTGAGGATTCTCTTGTGCCTCAAAAGCTTCAAGCCTTGAGTGATAAGTTAATCAGTCAGGTATCGGGTGGTTGGAGGCATAGTATGGCACTGACGTCTACTGGACTACTATATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGATCGTTGCTCTCCTGTGCAAGTGAAGTTCCCCCATGATCAGAAAGTAGTTCAGATCTCATGTGGGTGGAGACACACAATTGCTGTAACTGAAAAGGAAAATGTATTTTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCATGGGGATACCGTTGACCGGAATTCTCCAAAGATTATTGAGGCATTGAGTGTGGATGGATCTTCCGGGCCGCACATAGAATCCTCAAACACTGATCTATTGTCAGGGAAAAGTGGTGCCTCCTTATCTGAGAGATATGCAGTTGTTCCGGATGAAACTGTCTCAGGACAAACTGCTAGTTCAAGCAGTGGAGATAGGCTTGATATCAGTGTCCCAGAAAGTGATGTCAAACGGATCCGAGTTTGA 1425 0.4674 MLHSSSLLFLSPSTGPINVINPCPSFSSLFPPITMELEVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTVDRNSPKIIEALSVDGSSGPHIESSNTDLLSGKSGASLSERYAVVPDETVSGQTASSSSGDRLDISVPESDVKRIRV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01393 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 313 323 IPR000408 -
Gma06g01393 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 52 62 IPR000408 -
Gma06g01393 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 261 271 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 425 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 274 IPR000408 -
Gma06g01393 474 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 39 469 - -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 327 375 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 170 219 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 120 167 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 68 113 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 222 269 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 380 410 IPR000408 -
Gma06g01393 474 Pfam Regulator of chromosome condensation (RCC1) repeat 275 323 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Gma06g01393 474 MobiDBLite consensus disorder prediction 445 474 - -
Gma06g01393 474 SUPERFAMILY RCC1/BLIP-II 44 95 IPR009091 -
Gma06g01393 474 MobiDBLite consensus disorder prediction 446 461 - -
Gma06g01393 474 SUPERFAMILY RCC1/BLIP-II 171 410 IPR009091 -
Gma06g01393 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 209 219 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 119 170 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 326 IPR000408 -
Gma06g01393 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 365 375 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 171 222 IPR000408 -
Gma06g01393 474 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 39 469 - -
Gma06g01393 474 Gene3D - 49 420 IPR009091 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 67 83 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 121 137 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 171 187 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 209 225 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 225 239 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 316 334 IPR000408 -
Gma06g01393 474 PRINTS Chromosome condensation regulator RCC1 signature 374 395 IPR000408 -
Gma06g01393 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 117 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01393 Gma-Chr6 13163367 13173682 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01393 - - gmx:100776580 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02024 04 50674410 50682628 Gma06g01393 06 13163367 13173682 GST