Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip08g03199 | ATGGCAACCACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATTTATGAAGCTGAAGTTGGAGTAGCTGCTAAAAGAGAGGATGCTGCTCAGCTGCATCAGTTTATCCTGCATGCTGCTCTCGATATTGTTCAGGACCTAGCGTGGACTACTAGCGCTATGTACTTGAAATCGGTAGACAGGTTTAATGATCTGGTGGTCTCAGTATATGTCACAGCTG | 226 | 0.4336 | MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKSVDRFNDLVVSVYVTA | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip08g03199 | 75 | CDD | TRAPPC2_sedlin | 4 | 75 | - | - | |
| Aip08g03199 | 75 | Pfam | Sedlin, N-terminal conserved region | 9 | 74 | IPR006722 | GO:0006888 | |
| Aip08g03199 | 75 | PANTHER | BNAC06G40500D PROTEIN | 1 | 75 | - | - | |
| Aip08g03199 | 75 | SUPERFAMILY | SNARE-like | 1 | 75 | IPR011012 | - | |
| Aip08g03199 | 75 | Gene3D | - | 1 | 75 | - | - | |
| Aip08g03199 | 75 | PANTHER | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 | 1 | 75 | IPR006722 | GO:0006888 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip08g03199 | Aip-Chr8 | 122721083 | 122721758 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip08g03199 | K20301 | - | gmx:100527093 | 147.132 |