Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip08g03206 | ATGTGGCGCCGAAGCTACTCCCTCACGAAGCACCGTTTGGGGTTAGGGTTTCTACGAAGGTCCTTCTCATCAGAGCGAAGCGGAAAGAGGTTCGCGGCGCTCTGGGGGAACGGCGATTTCGGAAGATTAGGACTCGGCACTTTGGATTCTCAGTGGACTCCAGCTGTCTGCAACGCCTTCCAACACAAAACTCTCAAATCCATCGCTTGTGGCGGTGCTCACACACTCTTCCTAACAGACGATGGATTCGTGTATGCCACCGGTCTTAATGATTTCGGACAAGTTGGTATATCAGAGGGTAAACAGTACTTGGTGGAGCCAGTTCGGGTTTTGGTAGATGAGAAGAAGATTATGCACATTGCTGCTGGTTATAATCACTCGTGTGCAATAACAGCGGATGGAGAACTATATATGTGGGGAAAGAATACAAGTGGACAGCTTGGACTTGGAAAAAAAGCCCCAAACATAGTTCCTCTGCCAACTAAAGTGGAACATTTGGATGGAATCAGCATTAAAATGACAGCGCTGGGATCAGAGCACTCAATGGCTGTTAGTGATGGAGGAGAGGCCTTTAGTTGGGGGATGGGAGGTTCAGGTAGACTTGGTCATGGTCACGAGTCGGGCATTCTGGGATTATTTAAAAGTTACAGTGAGTATACTCCAAGGCTTATAAAGGATCTTGAGGGAATCAAGGTTAAATATATAGCTGCTGGGTTGCTAAATTCAGCTTGCATTGATGAAAATGGTTTTGTTTATATATTTGGAGAAAGAGGAATTGATAAATTGCGCTTGAAGGAGATGAGCAATGCAACAAAACCATCCTTAATTAATGAACTTCCATACTCACAGCAAGTTGCTTGTGGTGGCTATCATACCTGTGTCCTAACAAACTCTGGAGAGCTTTATACTTGGGGTTCGAATGAGAATGGCTGCCTCGGTATTGGTTCCCCTGATGCCATTCATGTACCAGAAAAGGTTCAAGGGCCATTCCTGAGGTCTTCTGTTAGTCAGGTTTCTTGTGGTTGGAAGCACACAGCGGCAATTTCTGAAGGAAGACTCTTCACATGGGGTTGGGGAGGTTCATATGGGACTTTCTCTGAAGTAGGACATTCTTCTGCTGGACAATTGGGCCAAGGAAGTGATGTGGACTACATAAATCCTGCTAGAGTTTGTTTTGGAGAAGAAGTGAAAGCATTACAAATTTCATGCGGGTTCAACCATACAGGTGCTATACTTGAATATACATAA | 1248 | 0.4511 | MWRRSYSLTKHRLGLGFLRRSFSSERSGKRFAALWGNGDFGRLGLGTLDSQWTPAVCNAFQHKTLKSIACGGAHTLFLTDDGFVYATGLNDFGQVGISEGKQYLVEPVRVLVDEKKIMHIAAGYNHSCAITADGELYMWGKNTSGQLGLGKKAPNIVPLPTKVEHLDGISIKMTALGSEHSMAVSDGGEAFSWGMGGSGRLGHGHESGILGLFKSYSEYTPRLIKDLEGIKVKYIAAGLLNSACIDENGFVYIFGERGIDKLRLKEMSNATKPSLINELPYSQQVACGGYHTCVLTNSGELYTWGSNENGCLGIGSPDAIHVPEKVQGPFLRSSVSQVSCGWKHTAAISEGRLFTWGWGGSYGTFSEVGHSSAGQLGQGSDVDYINPARVCFGEEVKALQISCGFNHTGAILEYT | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip08g03206 | 415 | SUPERFAMILY | RCC1/BLIP-II | 34 | 412 | IPR009091 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 35 | 78 | IPR000408 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 133 | 184 | IPR000408 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 188 | 245 | IPR000408 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 298 | 348 | IPR000408 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 369 | 411 | IPR000408 | - | |
| Aip08g03206 | 415 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 81 | 130 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 249 | 298 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 188 | 248 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 299 | 351 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 134 | 187 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 30 | 81 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 31 | 47 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 65 | 78 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 84 | 100 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 134 | 150 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 174 | 190 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 190 | 204 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 288 | 306 | IPR000408 | - | |
| Aip08g03206 | 415 | PRINTS | Chromosome condensation regulator RCC1 signature | 346 | 367 | IPR000408 | - | |
| Aip08g03206 | 415 | Gene3D | - | 208 | 414 | IPR009091 | - | |
| Aip08g03206 | 415 | PANTHER | OS11G0545800 PROTEIN | 26 | 414 | - | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 82 | 133 | IPR000408 | - | |
| Aip08g03206 | 415 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 351 | 414 | IPR000408 | - | |
| Aip08g03206 | 415 | Gene3D | - | 31 | 207 | IPR009091 | - | |
| Aip08g03206 | 415 | PANTHER | UBIQUITIN-PROTEIN LIGASE E3A-RELATED | 26 | 414 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip08g03206 | Aip-Chr8 | 122781788 | 122787659 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip08g03206 | - | - | ahf:112771572 | 830.476 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip08g03206 | 08 | 122781788 | 122787659 | Aip08g03206 | 08 | 122781788 | 122787659 | ECH |