Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2198 ATGAGTGGTCAAGTTTCTCAAACTCAATCCAGGAAGAGCAGACGCTCCTCCTCCACAGCCTCCAGAAAATCCGAGAACGGCGGAACCTCTTCCAAACCTCCGTCTCCACCTCCGCCGCAACCGGGGGATGGTGGAGAAAGGACGGTTAAGAAGTTGCGGTTGTCGAAGGCGCTGACGATTCCCGATGGGACAACTGTCTACGACGCCTGCCGGAGAATGGCAGCCCGCCGCGTTAACGCCGTCTTGCTCACTGATTCCAATGCTCTCCTCTCCGGAATTCTCACTGACAAGGATGTGGCTAGTAGAGTTATTGCAGAGGGGCTGCTGCCAGAGCAAACACCGGTCTCCAAAGTTATGACACGCACTCCTATATTTGTCACTTCTGATACGCTCGCCATCGAAGCTCTTCAGAAGATGGTCCAAGGTAAATTCAGGCACCTGCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTATACGATGCCATATCTAGGATGGAGAAGGCAGCTCAGCAAGGGAGTGCCATTGCAGCTGCAGTTGAGGGGGTGGAGTTGCAAAGGGGTAGTAATGGATCTGCTGCAAGTGCTTTCATTGAAACATTGAGGGAGCGCATGTTTAAGCCTTCCTTGTCAACTATAGTTGGTGAAAATTCAAAGGTTGCTATTGTATCATCATCAGATCCTGTCCAAGTAGCTGCAAAAAAGATGCGGGAGTTGCGTGTCAATTCAGCTGTGATTGCAAATGAAACCAAGCTTCAAGGGATACTTACTTCCAAGGACATCCTTATGCGTGTTGTGGCTCAAAATCTTGCTCCTGACACCACTCCAGTAGAAAAGGTAATGACTTCAAACCCTGAACATGCATCATTAGAGACAACAATTCTTGATGCACTCCATATGATGCATGATGGGAAGTTCTTACATCTTCCAGTGGTGGACAAAGACGGCAACATTGCTGCTTGTTTGGATGTTTTGCAAATAACAACTGCTGCAATTTCTCTGGTTGAAAGTAGCTCTGGAACTGTAAATGATGTGGCAAACTCAATTATGCAAAAATTTTGGGACTCAGCTTTAGCGCTAGAGCCACCAGATGATTATGACACTCAGAGTGAAGTTTCCGTGATAATGAATTCAGATGGAGCAGATACTGCAAAGTCTACGTACCAATCTGTAGGTCATGGAAATTCATTTACTTTTAAATTTGAGGATCCTAATGGTCGAGTGCATCGAGTCACCTGTGGAGCGGAAAATCTAGATGAGCTTGTATCTGCTATCATGGAAAGGGTCAGTAATAATGACAGATCACGCCCCGTAATTTTGTATGATGATGATGAAGGTGATAAAATTGTTATTGCAAACGATAGTGATCTCGTTTCTGCTGTCAGCTATGCTCGATCTGCAGGACTGAAGGCCTTGAAGTTGGATTTGGAGTTTACAGATTCAGCTAAACCCGTGACACCACAGTCTGCAATAGCCATGACCACAACCACAGCTACGAGACGGAAAACAGAAGGCGGCATGTTGTCCATTCGCTCGAGTATTTTGGCAGGTGCTGTTGTTCTAACGAGCATTGGCGTGGTGGCTTACTTGAAGCGCTCAAATCAGTGA 1626 0.4649 MSGQVSQTQSRKSRRSSSTASRKSENGGTSSKPPSPPPPQPGDGGERTVKKLRLSKALTIPDGTTVYDACRRMAARRVNAVLLTDSNALLSGILTDKDVASRVIAEGLLPEQTPVSKVMTRTPIFVTSDTLAIEALQKMVQGKFRHLPVVENGEVIAMLDITKCLYDAISRMEKAAQQGSAIAAAVEGVELQRGSNGSAASAFIETLRERMFKPSLSTIVGENSKVAIVSSSDPVQVAAKKMRELRVNSAVIANETKLQGILTSKDILMRVVAQNLAPDTTPVEKVMTSNPEHASLETTILDALHMMHDGKFLHLPVVDKDGNIAACLDVLQITTAAISLVESSSGTVNDVANSIMQKFWDSALALEPPDDYDTQSEVSVIMNSDGADTAKSTYQSVGHGNSFTFKFEDPNGRVHRVTCGAENLDELVSAIMERVSNNDRSRPVILYDDDEGDKIVIANDSDLVSAVSYARSAGLKALKLDLEFTDSAKPVTPQSAIAMTTTTATRRKTEGGMLSIRSSILAGAVVLTSIGVVAYLKRSNQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2198 541 Gene3D - 42 184 IPR046342 -
Amo08g2198 541 CDD CBS_pair_MUG70_2 223 339 - -
Amo08g2198 541 SMART PB1_new 402 485 IPR000270 GO:0005515
Amo08g2198 541 MobiDBLite consensus disorder prediction 1 30 - -
Amo08g2198 541 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 34 528 - -
Amo08g2198 541 MobiDBLite consensus disorder prediction 1 47 - -
Amo08g2198 541 Pfam PB1 domain 403 481 IPR000270 GO:0005515
Amo08g2198 541 Gene3D - 213 358 IPR046342 -
Amo08g2198 541 CDD CBS_pair_MUG70_1 54 170 - -
Amo08g2198 541 ProSiteProfiles CBS domain profile. 53 111 IPR000644 -
Amo08g2198 541 SUPERFAMILY CBS-domain pair 46 164 IPR046342 -
Amo08g2198 541 SMART cbs_1 225 272 IPR000644 -
Amo08g2198 541 SMART cbs_1 56 104 IPR000644 -
Amo08g2198 541 SMART cbs_1 122 166 IPR000644 -
Amo08g2198 541 SMART cbs_1 290 338 IPR000644 -
Amo08g2198 541 ProSiteProfiles CBS domain profile. 222 280 IPR000644 -
Amo08g2198 541 ProSiteProfiles PB1 domain profile. 400 485 IPR000270 GO:0005515
Amo08g2198 541 SUPERFAMILY CAD & PB1 domains 391 484 - -
Amo08g2198 541 SUPERFAMILY CBS-domain pair 224 335 IPR046342 -
Amo08g2198 541 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 34 528 - -
Amo08g2198 541 Pfam CBS domain 55 102 IPR000644 -
Amo08g2198 541 Pfam CBS domain 115 160 IPR000644 -
Amo08g2198 541 Pfam CBS domain 283 324 IPR000644 -
Amo08g2198 541 Pfam CBS domain 223 270 IPR000644 -
Amo08g2198 541 ProSiteProfiles CBS domain profile. 287 343 IPR000644 -
Amo08g2198 541 ProSiteProfiles CBS domain profile. 119 174 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2198 Amo-Chr8 34936357 34943001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2198 - - gmx:100796573 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3547 13 120184751 120189075 Amo08g2198 08 34936357 34943001 PCT
Amo03g2533 03 110463374 110467008 Amo08g2198 08 34936357 34943001 PCT