Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo08g2199 | ATGGCAACCACTGCTTGTTTCATCATTGTTAGCAGAAATGATATTCCTATTTATGAAGCTGAAGTTGGAGTAGCTGCTAAAAGAGAGGATGCTGCTCAGCTGCATCAGTTTATCCTGCATGCTGCTCTCGATATTGTTCAGGACCTAGCATGGACTACTAGTGCTATGTACTTGAAATCGGTAGACAGGTTTAATGATCTGGTGGTCTCAGTATATGTCACAGCTGGTCATACCCGTTTTATGTTGCTTCATGACTCTCGTAATGATGATGGCATTAAGAGCTTCTTCCAAGAGGTACACGAACTTTACATAAAGACACTTCTTAATCCCCTGTACTTGCCTGGCTCCCGGATCACATCATCACATTTTGACACGAAAGTCCGAGCTCTTGCCCGAAAATATTTGTAG | 408 | 0.4265 | MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKSVDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo08g2199 | 135 | Pfam | Sedlin, N-terminal conserved region | 9 | 133 | IPR006722 | GO:0006888 | |
| Amo08g2199 | 135 | Gene3D | - | 1 | 135 | - | - | |
| Amo08g2199 | 135 | SUPERFAMILY | SNARE-like | 1 | 135 | IPR011012 | - | |
| Amo08g2199 | 135 | CDD | TRAPPC2_sedlin | 4 | 135 | - | - | |
| Amo08g2199 | 135 | PANTHER | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 | 1 | 135 | IPR006722 | GO:0006888 | |
| Amo08g2199 | 135 | PANTHER | SNARE-LIKE SUPERFAMILY PROTEIN | 1 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo08g2199 | Amo-Chr8 | 34962774 | 34965493 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo08g2199 | K20301 | - | gmx:100781378 | 266.929 |