Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02404 ATGCAGGAGGTTGAGCCTGAAGCCACCGCCGCTTCTTCACCTCCGCCTCGCCGTGTTCTTCTTATATCAGCTGGTGCTAGCCACTCTGTTGCTCTTCTCTCTGGGAATGTTGTTTGCTCGTGGGGTAGAGGAGAAGATGGACAATTAGGTCATGGGGATACTGTTGATAGACTTTTGCCTACTCAACTTAGTGCATTGGATAATCAGCAAATTGTGTCTGTTGTTTGTGGAGCTGATCATACTATTGCTTATTCGGAGGAGCGTGTTGAAGTATATAGTTGGGGATGGGGTGACTTTGGACGGTTGGGTCATGGTAATTCTAGTGACTTGTTCATTCCTCAACCTATTAGAGCATTGCAAGGACTAAGGATAAAGCAACTTGTTTGCGGGGATAGCCACTGTTTGGCAGTTACTATGGAAGGCGAGGTTCAGAGTTGGGGGCGGAATCAAAATGGTCAACTTGGACTAGGCACTACGGAGGATTCACTTGTGCCACAAAAGATTCAAACATTTCAGGGAATACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCCATCACTGAAAATGGAGAGCTGTATGGATGGGGTTGGGGTCGATACGGAAACTTGGGACTGGGAGATAGAAATGATCGCTGTATTCCCGAGAAAGTTTCTTCTAATGATTGCGACAAGATGGTCATGGTTGCTTGTGGCTGGCGGCATACAATATCTGTTTCATCGTCTGGTGAACTATACACATATGGATGGAGCAAATATGGCCAACTAGGACATGGAGATTGTGAGGATCATCTTGTGCCTCACAAGCTTCAAGCCTTGAGTGATAAGTCAATTAGTCAGGTGGCAGGTGGTTGGAGGCATACTATGGCACTCACGACTGGTGGAATTCTTTATGGATGGGGCTGGAATAAGTTTGGACAAGTTGGAGTTGGTGACAATGTTGATCGCTGTTCTCCTGTGCAAGTGAAGTTTCCCCATGATCAGAAAGTAGTTCAGATGTCATGTGGGTGGAGACACACACTTGCTGTTACTGAAAAAGACAACGTATACTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGATTGGTGATACCATTGACTGGAATAGTCCAAAGATTATCGAGGCTTTGAGTGTTGATGGATCTTGTGGACAGCACATAGAATCCTCAAACACAGATCAATTATCAGGAAAAACCTTTGCCTCCTTAGCTGAGAGATATGCAGTTGTACCAGATGAAGCTGCGTCACTGCAATCTGTAGATAGGCTCGATCTTAGTGTCCCAGAGAGTGATGTCAAACGGATCAGAGTTTGA 1320 0.4568 MQEVEPEATAASSPPPRRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDTVDRLLPTQLSALDNQQIVSVVCGADHTIAYSEERVEVYSWGWGDFGRLGHGNSSDLFIPQPIRALQGLRIKQLVCGDSHCLAVTMEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQTFQGIPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRCIPEKVSSNDCDKMVMVACGWRHTISVSSSGELYTYGWSKYGQLGHGDCEDHLVPHKLQALSDKSISQVAGGWRHTMALTTGGILYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVVQMSCGWRHTLAVTEKDNVYSWGRGTNGQLGIGDTIDWNSPKIIEALSVDGSCGQHIESSNTDQLSGKTFASLAERYAVVPDEAASLQSVDRLDLSVPESDVKRIRV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02404 439 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 179 189 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 244 293 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 349 387 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 90 137 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 140 189 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 38 83 IPR000408 -
Vivi3g02404 439 Pfam Regulator of chromosome condensation (RCC1) repeat 192 239 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 396 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 37 53 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 344 365 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 141 157 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 286 304 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 91 107 IPR000408 -
Vivi3g02404 439 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Vivi3g02404 439 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 335 345 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 244 IPR000408 -
Vivi3g02404 439 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 231 241 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 36 87 IPR000408 -
Vivi3g02404 439 Gene3D - 2 228 IPR009091 -
Vivi3g02404 439 Gene3D - 235 406 IPR009091 -
Vivi3g02404 439 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 67 305 - -
Vivi3g02404 439 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 22 32 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 296 IPR000408 -
Vivi3g02404 439 SUPERFAMILY RCC1/BLIP-II 139 380 IPR009091 -
Vivi3g02404 439 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 283 293 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 141 192 IPR000408 -
Vivi3g02404 439 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 89 140 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02404 Vivi-Chr3 40459191 40465464 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02404 - - gmx:100776580 776.548