Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2526 ATGGAAACGGAAGCCACCGCCGCTACTTCTCCACCTTCTCCTGTTCTCCTCATCTCAGCCGGTGCCAGCCACTCCGTTGCCCTTCTCTCTGGAAATGTTGTGTGCTCGTGGGGTCGCGGAGAGGATGGACAGTTAGGCCACGGTGATACCGATGATAGAAATTTACCTACGCAGCTCAGTTCATTGGATGCTCAACAAATAGATTCTATTGCTTGCGGAGCTGATCACACCCTTGCGTATTCAGAGTCACGCATGGAACTATATAGTTGGGGATGGGGTGATTTTGGAAGGTTGGGTCATGGTAATTCTAGTGATTTGCTTGTTCCTCAGCCTATTATAGCATTACAAGGTCTAAGGATAAGGCAAATTGCCTGTGGGGATAGCCACTGTTTGGCAGTTACCATGGAAGGCAAGGTTCAGAGTTGGGGGAGGAATCAAAATGGTCAACTTGGACTTAGCACCACAGAGGATTCTCTTGTGCCACAAAAGATTCAAACGTTTCAGgGAGTACCTGTCAAAATGGTTGCTGCAGGTGCAGAACACAGTGTAGCTATTACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCCGATATGGAAATTTGGGGTTGGGGGATAGAAATGATCGCTGGATTCCTGAGAAAGTTTCTTCTGCTGATTGTGACAAGATGGTCATGGTTGCTTGTGGTTGGCGGCATACAATTTCTGTTTCATCTTCTGGTGGCTTATACACATATGGATGGAGCAAATATGGCCAGCTAGGACACGGGAATTTTGAGGATCATCTTGTGCCTCACAAGCTTCAAGCCTTGAGTGATAAGTTAATATGTCAGGTATCAGGTGGTTGGAGGCATAGTATGGCGCTCACGTCTAGTGGATTGCTATATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTCGGTGACAATGTTGATCGCTGCTCTCCTGTGCAAGTGAAGTTCCCCCATGATCAGAAAGTAGTTCAGATCTCATGTGGGTGGAGACACACAATTGCTGtaactgaaaaagaaaatgtatattCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCATGGGGATACCATTGACCGGAATTCTCCAAAGATTATTGAGGTATTGAGTGTTGATGGATCTTCTGGGCAGCATATAGAATCATCAAACACGGACCAATTGTCAGGGAAAAGCGGTTCCTCCTTATCTGAGAGATATGCAGTTGTTCCGGATGAAACTGTCTCGGGACAAACCACTAGTTCAAGCAGTGGCGATAGGCTTGATATTAGTGTCCCAGAAAGTGATGTCAAACGGATCCGAGTTTAA 1323 0.4603 METEATAATSPPSPVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRNLPTQLSSLDAQQIDSIACGADHTLAYSESRMELYSWGWGDFGRLGHGNSSDLLVPQPIIALQGLRIRQIACGDSHCLAVTMEGKVQSWGRNQNGQLGLSTTEDSLVPQKIQTFQGVPVKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSADCDKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGNFEDHLVPHKLQALSDKLICQVSGGWRHSMALTSSGLLYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVVQISCGWRHTIAVTEKENVYSWGRGTNGQLGHGDTIDRNSPKIIEVLSVDGSSGQHIESSNTDQLSGKSGSSLSERYAVVPDETVSGQTTSSSSGDRLDISVPESDVKRIRV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2526 440 MobiDBLite consensus disorder prediction 379 440 - -
Ssu1g2526 440 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 227 237 IPR000408 -
Ssu1g2526 440 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 18 28 IPR000408 -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 189 240 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 282 300 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 191 205 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 33 49 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 340 361 IPR000408 -
Ssu1g2526 440 PRINTS Chromosome condensation regulator RCC1 signature 175 191 IPR000408 -
Ssu1g2526 440 SUPERFAMILY RCC1/BLIP-II 13 218 IPR009091 -
Ssu1g2526 440 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 9 435 - -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 390 IPR000408 -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 32 83 IPR000408 -
Ssu1g2526 440 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 279 289 IPR000408 -
Ssu1g2526 440 Gene3D - 17 387 IPR009091 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 240 289 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 136 185 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 346 376 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 292 341 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 87 133 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 34 79 IPR000408 -
Ssu1g2526 440 Pfam Regulator of chromosome condensation (RCC1) repeat 188 235 IPR000408 -
Ssu1g2526 440 MobiDBLite consensus disorder prediction 380 401 - -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 188 IPR000408 -
Ssu1g2526 440 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 331 341 IPR000408 -
Ssu1g2526 440 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 435 - -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Ssu1g2526 440 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 175 185 IPR000408 -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 293 344 IPR000408 -
Ssu1g2526 440 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 241 292 IPR000408 -
Ssu1g2526 440 MobiDBLite consensus disorder prediction 411 427 - -
Ssu1g2526 440 SUPERFAMILY RCC1/BLIP-II 161 376 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2526 Ssu-Chr1 69566996 69574988 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2526 - - gmx:100776580 851.277