Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01922 ATGCACGCACCACCACCACACACCATGAGCACCTATCACCATTCCTCCAAGAAGATCAAACGCCCTCACAGAAAGTGTCTCTCCCTTCCCACCCGTAACGGAGTCACCCCTCCGGATGATGGTGGAGAAAGGACCGTTAAGAAGCTTCGCTTGTCCAAGGCCCTCACCATCCCCGATGGGACCACTGTCTCCGACGCCTGCAGACGCATGGCCGCTCGCCGCATCGACGCCGTTTTGCTCACCGATTCCAATGCTCTGCTTTCCGGAATTCTCACTGACAAGGACGTCGCTATGAGAGTCGTCGCCGAGGGGTCGAAACCGGAGGAGACGACGGTGTCCAAGGTTATGACGCGGAATCCCGTCTTTGTGACGTCGGATACACTCGCCATTGAAGCGCTTCAGAAGATGATCCAGGGTAAATTCAGACACCTCCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTATGATGCCATATCAAGGGTGGAGAGAGCTACTCAACAGGGGACTGCCATCGCTGCAGCAGTTGAGGGAGTGGAACTCCAGCAGGCTAGTAATGCGTCTGCTCCAAATACTTTCATTGAATCATTGAGGGAGCGTGTGTTCAAACCTTCCCTGGCAACAATTGTCGGTGAAAATACAAAGGTTGCAATTGCATCAGTATCAGATCCTGTCTATGTAGCTGCAAAAAGGATGCGGGAGTTGCAATTAAATTCAGCTGTGATTGTGATGGAAAATAAGATTCAGGGGATACTTACTTCAAAAGACATCCTTATGCGGGTCGTGGCTCAAAATCTTTCTCCTGATGTGACTCTTGTGGAAAAGGTGATGACCCCAAACCCAGAATATGCATCTCCAGAGACAACAATTCTTGAGGCACTGCATATGATGCATAATGGGAAGTTTTTACATCTTCCTGTGGTGGACAAAGATGGAATCGTTACTGCTTCTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGACCATCTAATGATGCAACAAACACAGTTATGCAAAAGTTTTGGGACTCAGCTTTTTCTCTAGAGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACTGCTGACTTTGGACGGGGCTGATACCACAAAGTCTACATATCAGTCTGTAGGTTTTGGAAATCCATTTGCTTTTAAATTTGAGGATCCCAATGGTCATGTGCATCGATTCTACTGTGGTGCTGAACATCTAGACGAGCTTGTATCTGCTGTCATGCAAATAGTTGGTGATTTTAATGATGGAGAACGCCCTACAATACTGTACAAGGACGATGAGGGTGATGAAATTATTCTTGAGACTGATAACGATCTTGTGGCTGCTGTCAGCTATGCAAGGTCTGCAGGATTGAAGGCTTTAAAATTGGATTTGCAGTTCGCTGATTTGACCAAACCAACAAAAGCATCATCTGATACACCCACTATACAGAAAAGCAGTACATTGTCTCTCCGTTCTGGTATTTTTGCGGGTGTTGTTGTTCTAACGAGCGTTAGCATATTGGTGTACTTAAAGCGCTCTAAACAGTAA 1596 0.4655 MHAPPPHTMSTYHHSSKKIKRPHRKCLSLPTRNGVTPPDDGGERTVKKLRLSKALTIPDGTTVSDACRRMAARRIDAVLLTDSNALLSGILTDKDVAMRVVAEGSKPEETTVSKVMTRNPVFVTSDTLAIEALQKMIQGKFRHLPVVENGEVIAMLDITKCLYDAISRVERATQQGTAIAAAVEGVELQQASNASAPNTFIESLRERVFKPSLATIVGENTKVAIASVSDPVYVAAKRMRELQLNSAVIVMENKIQGILTSKDILMRVVAQNLSPDVTLVEKVMTPNPEYASPETTILEALHMMHNGKFLHLPVVDKDGIVTASLDVLQITHAAISLVESSPGPSNDATNTVMQKFWDSAFSLEPPEDFDTHSEASGLLTLDGADTTKSTYQSVGFGNPFAFKFEDPNGHVHRFYCGAEHLDELVSAVMQIVGDFNDGERPTILYKDDEGDEIILETDNDLVAAVSYARSAGLKALKLDLQFADLTKPTKASSDTPTIQKSSTLSLRSGIFAGVVVLTSVSILVYLKRSKQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01922 531 Pfam CBS domain 52 99 IPR000644 -
Spst9g01922 531 Pfam CBS domain 112 157 IPR000644 -
Spst9g01922 531 Pfam CBS domain 220 267 IPR000644 -
Spst9g01922 531 Pfam CBS domain 280 320 IPR000644 -
Spst9g01922 531 ProSiteProfiles PB1 domain profile. 397 483 IPR000270 GO:0005515
Spst9g01922 531 MobiDBLite consensus disorder prediction 1 22 - -
Spst9g01922 531 SMART PB1_new 399 483 IPR000270 GO:0005515
Spst9g01922 531 SMART cbs_1 287 332 IPR000644 -
Spst9g01922 531 SMART cbs_1 119 163 IPR000644 -
Spst9g01922 531 SMART cbs_1 53 101 IPR000644 -
Spst9g01922 531 SMART cbs_1 222 269 IPR000644 -
Spst9g01922 531 Gene3D - 211 341 IPR046342 -
Spst9g01922 531 Pfam PB1 domain 400 481 IPR000270 GO:0005515
Spst9g01922 531 ProSiteProfiles CBS domain profile. 50 108 IPR000644 -
Spst9g01922 531 SUPERFAMILY CAD & PB1 domains 387 477 - -
Spst9g01922 531 CDD CBS_pair_MUG70_2 220 336 - -
Spst9g01922 531 ProSiteProfiles CBS domain profile. 219 277 IPR000644 -
Spst9g01922 531 Gene3D - 38 180 IPR046342 -
Spst9g01922 531 ProSiteProfiles CBS domain profile. 284 340 IPR000644 -
Spst9g01922 531 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 43 470 - -
Spst9g01922 531 SUPERFAMILY CBS-domain pair 43 161 IPR046342 -
Spst9g01922 531 ProSiteProfiles CBS domain profile. 116 173 IPR000644 -
Spst9g01922 531 SUPERFAMILY CBS-domain pair 221 333 IPR046342 -
Spst9g01922 531 CDD CBS_pair_MUG70_1 51 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01922 Spst-Chr9 27354826 27360082 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01922 - - gmx:100809841 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01922 9 27354826 27360082 Spst9g01922 9 27354826 27360082 ECH
Spst3g01135 3 14673534 14679623 Spst9g01922 9 27354826 27360082 PCT