Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1572 ATGACAACCCCTAACCATTCCTCCAGGAAGACCAAACGCCCTACTAACATTCACAGAAAGTCCATGTCCCTCCCCGCTCGTAACGGAATCTCCACTCCGGATGACGACGGAGAAAGGACCGTTAAGAAGCTTCGCTTGTCCAAAGCCCTCACCATCCCCGACGGAACCACCGTCTCCGAAGCCTGCAGACGCATGGCCACTCGCCGCATCGACGCCGTTTTGCTCACCGATTCCAATGCTCTGCTTTCCGGAATTCTAACTGACAAGGACGTCGCTATGAGAGTCGTCGCCGAGGGGATGAAACCGGAGGAGACCGCGGTGTCCAAGGTCATGACGCGGAATCCCGTCTTCGTGACGTCGGATACCCTCGCCATTGAAGCGCTTCAGAAGATGATCCAGGGTAAATTCAGACACCTCCCAGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTACGATGCCATATCTAGGGTGGAAAGAGCTACTGAACAGGGGAGTGCTATTGCTGCAGCAGTTGAGGGAGTGGAACTCCGACAGCCTAGTCATCTACCTGTTACAAATACTTTTATTGAAACATTGAGGGAGCGCGTGTTCAAACCTTCCCTGACAACTATAGTTGGTGAAAATACAAAGGTTGCTATTGCATCAGTATCAGATCCTGTCTATGTAGCAGCAAAAAGGATGCGGGAGTTGCAAGTAAATTCAGCTGTGATTGTAATGGAAAATAAGATTCAGGGGATACTTACTTCGAAAGACATCCTTATGCGGGTCATGGCTCAAAATCTTTCTCCTGATGTGACTCTTGTGGAAAAGGTCATGACTCCAAACCCAGAATATGCATCTTCGGAGACCACAATTCTTGAGGCACTGACTATGATGCATAATGGGAAGTACTTACATCTTCCTGTGGTGGACAAAGATGGAACTGTTATTGCTTGTTTGGATGTGTTGCAGATAACTCATGCTGCGATTTCGCTGGTTGAAAGTAGTCCTGGAGCTTCTAATGATGCGGCAAACACTGTTATGCAAAAATTTTGGGACTCAGCTTTTGCTCTAGAGCCGCCTGAAGATTTTGACAGCCATAGTGAAGCCTCTGGACTGATGACTTTGGACGGGGCAGATACCACAAAGTCTACATATCACTCTGTAGGTTTTGGAAATCCATTTGCTTTTAAATTTGAGGATCTCAATGGCCATGTGCATCGATTCTACTGTGCTGAACATCTAGACGAGCTTCAATCTGCTGTCATGCAAATAATTGGTGATTTTAATGAAGGAGAACGCCCTAAAATTCTGTATAAGGACGATGAAGATGATGAAATTATTCTCGAGACTGATAACGATCTTGTGGCTGCTGTCAGCTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAATTGGATTTGCAGTTTGCCAATTCGACCAAACCAACAGAGGTATCATCTGGTACAGCCAGTATACAGAAATCCAGTACATTGTCTCTCCGTTCTGGTATTTTTGCGGGTGTTGTTATTCTTACGAGCATTAGCGTATTGGTGTACTTAAAGCGCTCTAAACAGTAA 1578 0.4601 MTTPNHSSRKTKRPTNIHRKSMSLPARNGISTPDDDGERTVKKLRLSKALTIPDGTTVSEACRRMATRRIDAVLLTDSNALLSGILTDKDVAMRVVAEGMKPEETAVSKVMTRNPVFVTSDTLAIEALQKMIQGKFRHLPVVENGEVIAMLDITKCLYDAISRVERATEQGSAIAAAVEGVELRQPSHLPVTNTFIETLRERVFKPSLTTIVGENTKVAIASVSDPVYVAAKRMRELQVNSAVIVMENKIQGILTSKDILMRVMAQNLSPDVTLVEKVMTPNPEYASSETTILEALTMMHNGKYLHLPVVDKDGTVIACLDVLQITHAAISLVESSPGASNDAANTVMQKFWDSAFALEPPEDFDSHSEASGLMTLDGADTTKSTYHSVGFGNPFAFKFEDLNGHVHRFYCAEHLDELQSAVMQIIGDFNEGERPKILYKDDEDDEIILETDNDLVAAVSYARSAGLKALKLDLQFANSTKPTEVSSGTASIQKSSTLSLRSGIFAGVVILTSISVLVYLKRSKQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1572 525 CDD CBS_pair_MUG70_2 215 331 - -
Pvu9g1572 525 Gene3D - 206 343 IPR046342 -
Pvu9g1572 525 ProSiteProfiles PB1 domain profile. 379 477 IPR000270 GO:0005515
Pvu9g1572 525 SUPERFAMILY CBS-domain pair 216 329 IPR046342 -
Pvu9g1572 525 CDD CBS_pair_MUG70_1 46 162 - -
Pvu9g1572 525 Gene3D - 27 176 IPR046342 -
Pvu9g1572 525 SMART cbs_1 217 264 IPR000644 -
Pvu9g1572 525 SMART cbs_1 282 330 IPR000644 -
Pvu9g1572 525 SMART cbs_1 48 96 IPR000644 -
Pvu9g1572 525 SMART cbs_1 114 158 IPR000644 -
Pvu9g1572 525 SMART PB1_new 394 477 IPR000270 GO:0005515
Pvu9g1572 525 Pfam CBS domain 215 263 IPR000644 -
Pvu9g1572 525 Pfam CBS domain 275 317 IPR000644 -
Pvu9g1572 525 Pfam CBS domain 107 152 IPR000644 -
Pvu9g1572 525 Pfam CBS domain 47 94 IPR000644 -
Pvu9g1572 525 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 9 512 - -
Pvu9g1572 525 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 9 512 - -
Pvu9g1572 525 SUPERFAMILY CAD & PB1 domains 382 472 - -
Pvu9g1572 525 SUPERFAMILY CBS-domain pair 38 156 IPR046342 -
Pvu9g1572 525 ProSiteProfiles CBS domain profile. 279 335 IPR000644 -
Pvu9g1572 525 ProSiteProfiles CBS domain profile. 214 272 IPR000644 -
Pvu9g1572 525 ProSiteProfiles CBS domain profile. 111 168 IPR000644 -
Pvu9g1572 525 ProSiteProfiles CBS domain profile. 45 103 IPR000644 -
Pvu9g1572 525 MobiDBLite consensus disorder prediction 1 39 - -
Pvu9g1572 525 Pfam PB1 domain 396 475 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1572 Pvu-Chr9 22125620 22130047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1572 - - gmx:100809841 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1572 9 22125620 22130047 Pvu9g1572 9 22125620 22130047 ECH
Pvu2g2948 2 45016388 45023149 Pvu9g1572 9 22125620 22130047 PCT