Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01728 ATGTGGCGTCGAAGCTTCTCCAGATTCGCCATTAGAGCTTCCGGTTTAGGTTTTCTAACGCGATCTTTCTCGCGCGTGGAGGGAAAGAGGTTCGCTGCGTTGTGGGGGAACGGCGATTACGGCAGATTGGGTCTCGGCAACTTGAATTCGCAATGGAAACCCGTCGTTTGCACCGCCCTCGGCAACGAGAACCTTAAAGCCATTGCTTGTGGCGGTGCTCACACTCTCTTCTTAACAGGGATGCCTTGGATCTTTTCTTGGGTTCATGAGAATTGGAATATTAGTAATAATTGTCATCACTGGGCTATTGGATTGGATGATACAATATGCCGGTGTATAAAATTGGTGATGAGTCAGATGACTATTGAAGAGGGCTCACAATACTGTCTTCCTTTCGCAGACGATGGATGTGTATATGCAACTGGTCTTAATGATTTTGGGCAGCTTGGTGTCTCAGAGAGTAAGCACTACTCAGTGATGAATGCATGCCCTCTGGACATAAGTAGGAACCAGGAAAATTTACTTAGACAGCGCCATTTTTGGATATCTCAGGAGCCACTTCGTGTTTTTGGAGAGGAGAAGAAAATTGTGCACATCTCTGCTGGTTATAATCATTCTTGTGCGATCACAGGTCGGTGCATATGCATGGTTGATTTCGTCCTACTCGGTCATGTAACAATTGGTCCGACCTACTGGATAGTCAGAGAGGAGAAAAAGCTGGAGAACTTGGAACTATCCATGAGGGGATTGGAGACGAAGATCGAGGCAGTACGCAAGGGTTTGCAAGAATTGCCGAGGAAGATGGAAGAGCGAGCCCGACAATCAGAAGAAAATTCTGATGGAAGCCAGGCTTATGTCAACGGGAAGAAGGAGAACCAACGAAAGGAAGAAGAGGGAGAGAGAGATGGCGGATGCCACGAGGAGCAACCAAATTGGAGAAAAGGGGTAGAGTTACCCATTTTTGACAGGGTTGATCCATTGAATCGATCAGTAGAATTTTGGAAGAGGAACGCCAAGAATCGTTCTTGGGAAGGTTTAAAGGAGGCGATGGTGATTCGATTCATAGAAGGGAACACTAGGTCAGTCTTCGAAAGACTGGCAGCCAGTAAGCAGTCGAGGATCGGGGAAGAATACGTCCAAGCTCCGAACAGGAAGGAACTGCTGGAACCGAACGGTAGCGAATTGACGAATTCGAACGTGAGAGAACTGGCAGAACCGAACGGTAGCAGACTGTTGGATCCGAACGTAAAGAGGACCTACCGAGCCGAACAGGAGAGGACAGCTAGAACCAACCGTGAGGAACTTACTGGAAGGAAGAATGAAGGTTTTGGTAGGAAGGGCAGATGGAAGAATCAATGCCATGGAGAGAACAAAGAATTCATTGAAGTGGTGGGCCATCGAAAAGAACAGGGGGCTGTAGTTTTTGATACATCGGTAGAAGGAAGAGAACGACATGAAGTCTTGAAAGACATTGAAGACCATTTCCTCAAGACTTATGATTCTGGAAAACGGGTGAACAGAATATTGAATGAAGAATGGAAGACATTGGAGGAGGTTTTACCACCACCCAAACCTCCATACCTGAATTGGAGGACAACAATCAGTGAGTACTGGCCATATGATAACACGAGGATGAAGAGAAGCCAGGAGATCAAGTTTCACAGTTCCAACCTTTGA 1677 0.4663 MWRRSFSRFAIRASGLGFLTRSFSRVEGKRFAALWGNGDYGRLGLGNLNSQWKPVVCTALGNENLKAIACGGAHTLFLTGMPWIFSWVHENWNISNNCHHWAIGLDDTICRCIKLVMSQMTIEEGSQYCLPFADDGCVYATGLNDFGQLGVSESKHYSVMNACPLDISRNQENLLRQRHFWISQEPLRVFGEEKKIVHISAGYNHSCAITGRCICMVDFVLLGHVTIGPTYWIVREEKKLENLELSMRGLETKIEAVRKGLQELPRKMEERARQSEENSDGSQAYVNGKKENQRKEEEGERDGGCHEEQPNWRKGVELPIFDRVDPLNRSVEFWKRNAKNRSWEGLKEAMVIRFIEGNTRSVFERLAASKQSRIGEEYVQAPNRKELLEPNGSELTNSNVRELAEPNGSRLLDPNVKRTYRAEQERTARTNREELTGRKNEGFGRKGRWKNQCHGENKEFIEVVGHRKEQGAVVFDTSVEGRERHEVLKDIEDHFLKTYDSGKRVNRILNEEWKTLEEVLPPPKPPYLNWRTTISEYWPYDNTRMKRSQEIKFHSSNL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01728 558 Coils Coil 233 260 - -
Vimu10g01728 558 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 212 IPR000408 -
Vimu10g01728 558 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 81 IPR000408 -
Vimu10g01728 558 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 31 334 - -
Vimu10g01728 558 MobiDBLite consensus disorder prediction 289 310 - -
Vimu10g01728 558 Gene3D - 25 218 IPR009091 -
Vimu10g01728 558 Pfam Regulator of chromosome condensation (RCC1) repeat 35 78 IPR000408 -
Vimu10g01728 558 Pfam Regulator of chromosome condensation (RCC1) repeat 135 209 IPR000408 -
Vimu10g01728 558 MobiDBLite consensus disorder prediction 266 310 - -
Vimu10g01728 558 MobiDBLite consensus disorder prediction 421 449 - -
Vimu10g01728 558 SUPERFAMILY RCC1/BLIP-II 34 210 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01728 Vimu-Chr10 23895017 23897942 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01728 - - vun:114196144 203.756