Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1578 . . Adu08g02610 . Aev08g2530 Ahy18g2801 Ahy8g2517 Aip08g03187 . Amo08g2190 . . Arst8g03604 Bach2g02365 . Bva06g01635 . . . Dod09g0820 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01745 . . Pste2g00081 . . . Spst9g01912 . . . . . . . . . . .
Pvu9g1579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01911 . . . . . . . . . . .
Pvu9g1580 . . Adu08g02609 . Aev08g2529 Ahy18g2800 Ahy8g2516 Aip08g03186 . Amo08g2189 . . . . . . . . . . . . Gma04g02014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1581 . . . . . . . . . . . . . . . . . . . Dod09g0821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1582 . . Adu08g02608 . Aev08g2528 Ahy18g2799 Ahy8g2515 Aip08g03185 . Amo08g2188 . . Arst8g03602 Bach2g02363 . Bva06g01633 . . . Dod09g0822 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01750 . . . . . . Spst9g01909 . . . . . . . . . Vivi3g02386 .
Pvu9g1583 . . Adu08g02607 . Aev08g2527 Ahy18g2798 Ahy8g2514 Aip08g03184 . . . . Arst8g03601 Bach2g02362 . Bva06g01632 . . . Dod09g0823 . . . . . . . . . Lan15g0517 . . . . . . . . . . . . . . . Phco7g01751 . . Pste2g00069 . . . . Ssu1g2519 . . . . . . . . Vivi3g02385 .
Pvu9g1584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01752 . . Pste2g00068 . . . . Ssu1g2518 . . . . . . . . . .
Pvu9g1585 . . Adu08g02606 . Aev08g2525 Ahy18g2797 Ahy8g2513 Aip08g03183 . Amo08g2187 . . Arst8g03600 . . . . . . Dod09g0824 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01753 . . Pste2g00066 . . . Spst9g01905 . . . . . . . . . . .
Pvu9g1586 . . Adu08g02605 . . Ahy18g2796 Ahy8g2512 Aip08g03182 . Amo08g2186 . . Arst8g03599 Bach2g02361 . Bva06g01631 . . . Dod09g0825 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01754 . . Pste2g00060 . . . Spst9g01903 . . . . . . . . . . .
Pvu9g1587 . . Adu08g02604 . . Ahy18g2795 Ahy8g2511 Aip08g03181 . Amo08g2185 . . Arst8g03598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01755 . . Pste2g03766 . . . Spst9g01902 . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu9g1578 Chr9 22194415 22199545 +
Adu Adu08g02610 Chr08 42203792 42211912 -
Aev Aev08g2530 Chr08 24038967 24047721 -
Ahy Ahy18g2801 Chr18 132285698 132289532 -
Ahy Ahy8g2517 Chr8 48034756 48038364 -
Aip Aip08g03187 Chr08 122603627 122613475 -
Amo Amo08g2190 Chr08 34862070 34866994 -
Arst Arst8g03604 Chr8 46576273 46579115 -
Bach Bach2g02365 Chr2 30019214 30021954 -
Bva Bva06g01635 Chr06 11549961 11553504 -
Dod Dod09g0820 Chr09 26106511 26109438 +
Phco Phco7g01745 Chr7 17632454 17637414 +
Pste Pste2g00081 Chr2 283045 286301 -
Spst Spst9g01912 Chr9 26862158 26865966 -
Pvu Pvu9g1579 Chr9 22200124 22200909 -
Spst Spst9g01911 Chr9 26858062 26859370 +
Pvu Pvu9g1580 Chr9 22201087 22201775 -
Adu Adu08g02609 Chr08 42201308 42202693 +
Aev Aev08g2529 Chr08 24036976 24038089 +
Ahy Ahy18g2800 Chr18 132283800 132285655 +
Ahy Ahy8g2516 Chr8 48032863 48034838 +
Aip Aip08g03186 Chr08 122601065 122602446 +
Amo Amo08g2189 Chr08 34861527 34862957 +
Gma Gma04g02014 Chr04 50575721 50577528 -
Pvu Pvu9g1581 Chr9 22214660 22216369 -
Dod Dod09g0821 Chr09 26110325 26111622 -
Pvu Pvu9g1582 Chr9 22229807 22236799 +
Adu Adu08g02608 Chr08 42173531 42184194 -
Aev Aev08g2528 Chr08 24023869 24029798 -
Ahy Ahy18g2799 Chr18 132247234 132260116 -
Ahy Ahy8g2515 Chr8 48004425 48015357 -
Aip Aip08g03185 Chr08 122563017 122578667 -
Amo Amo08g2188 Chr08 34806922 34836972 -
Arst Arst8g03602 Chr8 46546150 46556881 -
Bach Bach2g02363 Chr2 30008196 30012909 -
Bva Bva06g01633 Chr06 11539878 11544906 -
Dod Dod09g0822 Chr09 26125201 26132394 +
Phco Phco7g01750 Chr7 17671761 17678289 +
Spst Spst9g01909 Chr9 26801056 26821334 -
Vivi Vivi3g02386 Chr3 40257824 40264071 +
Pvu Pvu9g1583 Chr9 22243567 22253248 +
Adu Adu08g02607 Chr08 42157131 42164159 -
Aev Aev08g2527 Chr08 24015571 24021939 -
Ahy Ahy18g2798 Chr18 132233634 132240809 -
Ahy Ahy8g2514 Chr8 47987478 47994693 -
Aip Aip08g03184 Chr08 122546400 122554925 -
Arst Arst8g03601 Chr8 46529931 46536797 -
Bach Bach2g02362 Chr2 29998623 30006710 -
Bva Bva06g01632 Chr06 11531294 11539229 -
Dod Dod09g0823 Chr09 26159811 26172092 +
Lan Lan15g0517 Chr15 12133066 12141591 +
Phco Phco7g01751 Chr7 17684719 17693676 +
Pste Pste2g00069 Chr2 232912 260008 -
Ssu Ssu1g2519 Chr1 69462472 69474222 +
Vivi Vivi3g02385 Chr3 40229461 40235534 +
Pvu Pvu9g1584 Chr9 22255194 22256723 -
Phco Phco7g01752 Chr7 17696258 17697954 -
Pste Pste2g00068 Chr2 229295 230435 +
Ssu Ssu1g2518 Chr1 69399078 69400225 -
Pvu Pvu9g1585 Chr9 22262405 22264345 +
Adu Adu08g02606 Chr08 42153652 42155859 -
Aev Aev08g2525 Chr08 24004247 24005597 -
Ahy Ahy18g2797 Chr18 132230062 132232265 -
Ahy Ahy8g2513 Chr8 47983885 47986105 -
Aip Aip08g03183 Chr08 122544847 122546322 -
Amo Amo08g2187 Chr08 34803086 34805319 -
Arst Arst8g03600 Chr8 46526453 46528758 -
Dod Dod09g0824 Chr09 26218267 26220672 +
Phco Phco7g01753 Chr7 17710240 17711927 +
Pste Pste2g00066 Chr2 216764 218865 +
Spst Spst9g01905 Chr9 26665656 26667351 -
Pvu Pvu9g1586 Chr9 22265849 22272023 -
Adu Adu08g02605 Chr08 42146575 42151892 +
Ahy Ahy18g2796 Chr18 132214561 132219892 +
Ahy Ahy8g2512 Chr8 47976730 47982024 +
Aip Aip08g03182 Chr08 122529092 122534463 +
Amo Amo08g2186 Chr08 34787745 34793084 +
Arst Arst8g03599 Chr8 46519218 46524369 +
Bach Bach2g02361 Chr2 29993088 29997815 +
Bva Bva06g01631 Chr06 11526311 11530901 +
Dod Dod09g0825 Chr09 26227719 26232525 -
Phco Phco7g01754 Chr7 17713803 17719562 -
Pste Pste2g00060 Chr2 202502 208184 +
Spst Spst9g01903 Chr9 26590079 26597774 +
Pvu Pvu9g1587 Chr9 22289826 22295611 -
Adu Adu08g02604 Chr08 42142783 42145532 +
Ahy Ahy18g2795 Chr18 132210202 132213463 +
Ahy Ahy8g2511 Chr8 47971869 47975065 +
Aip Aip08g03181 Chr08 122524963 122528266 +
Amo Amo08g2185 Chr08 34782834 34786041 +
Arst Arst8g03598 Chr8 46515450 46518442 +
Phco Phco7g01755 Chr7 17727895 17733218 -
Pste Pste2g03766 Chr2 42406178 42418911 -
Spst Spst9g01902 Chr9 26556829 26577986 +