Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2206 ATGTGGCGCCGAAGCTACTCCCTCACGAAGCACCGTTTGGGGTTAGGGTTTCTACGAAGGTCCTTCTCATCAGAGCGAAGCGGAAAGAGGTTCGCGGCGCTCTGGGGGAACGGCGATTTCGGAAGATTAGGACTCGGCACTTTGGATTCTCAGTGGACTCCAGCTGTCTGCAACGCCTTCCAACACAAAACTCTCAAATCCATCGCTTGTGGCGGTGCTCACACACTCTTCCTAACAGACGATGGATTCGTGTATGCCACCGGTCTTAATGATTTCGGACAAGTTGGTATATCAGAGGGTAAACAGTACTTTGTGGAGCCAGTTCGGGTTTTGGTAGATGAGAAGAAGATTATGCACATTGCTGCTGGTTATAATCACTCGTGTGCAATAACAGTGGATGGAGAACTATATATGTGGGGAAAGAATACAAGTGGACAGCTTGGACTTGGAAAAAAGGCCCCAAACATAGTTCCTCTGCCAACTAAAGTGGAACATTTGGATGGAATCAGCATTAAAATGACAGCGCTGGGATCAGAGCACTCAATGGCTGTTAGTGATGGAGGAGAGGCCTTTAGTTGGGGGATGGGAGGTTCAGGTAGACTTGGTCATGGTCACGAGTCGGGCATTCTGGGATTATTTAAAAGTTACAGTGAGTATACTCCAAGGCTTATAAAGGATCTTGAGGGAATCAAGGTTAAATATATAGCTGCTGGGTTGCTAAATTCAGCTTGCATTGATGAAAATGGTTTTGTTTATATATTTGGAGAAAGAGGAATTGATAAATTGCGCTTGAAGGAGATGAGCAATGCAACAAAACCATCCTTAATTAATGAACTTCCATACTCACAGCAAGTTGCTTGTAGTGGCTATCATACCTGTGTCCTAACAAACTCTGGAGAGCTTTATACTTGGGGTTCGAATGAGAATGGCTGCCTCGGTATTGGTTCCCCTGATGCCATTCATGTACCAGAAAAGGTTCAAGGGCCATTCCTGAGGTCTTCTGTTAGTCAGGTTTCTTGTGGTTGGAAGCACACAGCGGCAATTTCTGAAGGAAGACTCTTCACATGGGGTTGGGGAGGTTCATATGGGACTTTCTCTGAAGTAGGACATTCTTCTGCTGGACAATTGGGCCAAGGAAGTGATGTGGACTACATAAATCCTGCTAGAGTTTGTTTTGGAGAAGAAGTGAAAGCATTACAAATTTCATGCGGGTTCAACCATACAGGTGCTATACTTGAATATACATAA 1248 0.4495 MWRRSYSLTKHRLGLGFLRRSFSSERSGKRFAALWGNGDFGRLGLGTLDSQWTPAVCNAFQHKTLKSIACGGAHTLFLTDDGFVYATGLNDFGQVGISEGKQYFVEPVRVLVDEKKIMHIAAGYNHSCAITVDGELYMWGKNTSGQLGLGKKAPNIVPLPTKVEHLDGISIKMTALGSEHSMAVSDGGEAFSWGMGGSGRLGHGHESGILGLFKSYSEYTPRLIKDLEGIKVKYIAAGLLNSACIDENGFVYIFGERGIDKLRLKEMSNATKPSLINELPYSQQVACSGYHTCVLTNSGELYTWGSNENGCLGIGSPDAIHVPEKVQGPFLRSSVSQVSCGWKHTAAISEGRLFTWGWGGSYGTFSEVGHSSAGQLGQGSDVDYINPARVCFGEEVKALQISCGFNHTGAILEYT* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2206 415 PANTHER OS11G0545800 PROTEIN 26 414 - -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 190 204 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 65 78 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 346 367 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 84 100 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Amo08g2206 415 PRINTS Chromosome condensation regulator RCC1 signature 288 306 IPR000408 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 188 248 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 188 245 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 35 78 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 81 130 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 133 184 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 298 348 IPR000408 -
Amo08g2206 415 Pfam Regulator of chromosome condensation (RCC1) repeat 369 411 IPR000408 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 351 IPR000408 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 298 IPR000408 -
Amo08g2206 415 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 26 414 - -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 82 133 IPR000408 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 134 187 IPR000408 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 81 IPR000408 -
Amo08g2206 415 Gene3D - 31 207 IPR009091 -
Amo08g2206 415 SUPERFAMILY RCC1/BLIP-II 35 359 IPR009091 -
Amo08g2206 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 414 IPR000408 -
Amo08g2206 415 Gene3D - 208 414 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2206 Amo-Chr8 35042764 35048409 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2206 - - ahf:112771572 825.083