Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1371 . . Adu06g00889 Aed4g0448 . Ahy16g0420 Ahy6g0908 Aip06g00406 . Amo16g0232 . Apr4g1216 Arst6g01181 . . . Car03g02102 Cca03g01951 . Dod01g2244 . . Gma19g01315 Gma03g01268 . Gso3g1167 . . . . . . Lapu1g00173 Lasa3g02772 . . . . Lja1g1298 Mal3g3517 Mepo3g02856 Mesa25g01315 . Mtr7g2637 Phac1g01830 Phco2g01534 . Psa3g1696 Pste5g00252 . Rops8g02816 Seca8g04848 Spst1g03397 Ssu4g1489 . Tpr6g1499 Trre13g03405 Tsu07g03347 Vian2g01938 Vifa5g02336 Vimu6g03061 Viun1g01737 Vivi6g04394 Vra3g0276
Pvu1g1372 Acco02g1125 Accr2g02607 . Aed4g0447 Aev06g1311 . . . Alju01g1109 . . Apr4g1215 . Bach8g01152 Bisa03g2370 Bva04g02178 . Cca03g01952 Dere01g2434 Dod01g2246 Enph2g0869 Glsi02g2341 Gma19g01316 Gma03g01269 Gso19g1164 Gso3g1168 . . . . . . Lapu1g00171 . Lele05g0864 Lele06g0718 Lele07g0905 Lele08g0718 Lja1g1297 . . . Mibi02g1013 . . Phco2g01535 Prci1g3282 . Pste5g00255 . . Seca8g04850 Spst1g03396 Ssu4g1488 Sto8g1312 . . . Vian2g01939 . Vimu6g03060 Viun1g01742 Vivi4g03618 Vra3g0275
Pvu1g1373 . . . . . . . . . . . Apr4g1214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1375 . . . . . Ahy16g0414 . Aip06g00402 . Amo16g0228 . . . . . . . Cca03g01953 . . . . . . Gso19g1165 . . . . . . . . . . . . . . . . . . . . Phco2g01536 . . . . . . . . . . . . . . . . . .
Pvu1g1376 . . . . . Ahy16g0413 Ahy6g0913 Aip06g00400 . . . Apr4g1212 . . . . Car03g02103 Cca03g01954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Seca2g04031 . . . . . . . . Vimu6g03056 Viun1g01743 Vivi6g04396 Vra3g0274
Pvu1g1377 . . . . . . Ahy6g0914 . . . . . . . . . . . . . . . . . Gso19g1166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1378 . . . . . Ahy16g0411 . . . . . Apr4g1211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu6g03053 . . Vra3g0273
Pvu1g1379 . . . . . . Ahy6g0916 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01537 . . . . . . . . . . . . . . . . . .
Pvu1g1380 . . . . . . . Aip06g00398 . . . Apr4g1210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr6g1503 . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1371 Chr1 37373017 37377149 -
Adu Adu06g00889 Chr06 10906564 10909289 -
Aed Aed4g0448 Chr4 3293501 3296837 +
Ahy Ahy16g0420 Chr16 8047745 8050981 +
Ahy Ahy6g0908 Chr6 11695875 11699156 -
Aip Aip06g00406 Chr06 4777944 4780631 +
Amo Amo16g0232 Chr16 3478534 3481814 +
Apr Apr4g1216 Chr4 10768407 10772489 +
Arst Arst6g01181 Chr6 10936434 10939688 -
Car Car03g02102 Chr03 67271110 67274780 -
Cca Cca03g01951 Chr03 39416867 39426413 -
Dod Dod01g2244 Chr01 60165045 60169262 -
Gma Gma19g01315 Chr19 42407927 42412016 -
Gma Gma03g01268 Chr03 38711000 38719130 -
Gso Gso3g1167 Chr3 37186777 37190543 -
Lapu Lapu1g00173 Chr1 7507509 7512440 +
Lasa Lasa3g02772 Chr3 590305227 590308658 -
Lja Lja1g1298 Chr1 13539215 13543173 +
Mal Mal3g3517 Chr3 112354856 112359112 -
Mepo Mepo3g02856 Chr3 38625956 38630914 -
Mesa Mesa25g01315 Chr25 16010711 16014626 +
Mtr Mtr7g2637 Chr7 43064361 43069826 -
Phac Phac1g01830 Chr1 27975641 27980275 -
Phco Phco2g01534 Chr2 45354110 45357855 -
Psa Psa3g1696 Chr3 150977877 150981707 +
Pste Pste5g00252 Chr5 1783875 1787419 -
Rops Rops8g02816 Chr8 63478369 63481178 -
Seca Seca8g04848 Chr8 134603180 134605063 -
Spst Spst1g03397 Chr1 42597415 42600738 +
Ssu Ssu4g1489 Chr4 25168757 25173783 +
Tpr Tpr6g1499 Chr6 16247901 16252044 -
Trre Trre13g03405 Chr13 41662895 41667751 +
Tsu Tsu07g03347 Chr07 39964317 39967758 -
Vian Vian2g01938 Chr2 38765976 38772153 -
Vifa Vifa5g02336 Chr5 767431472 767435053 -
Vimu Vimu6g03061 Chr6 26926953 26932474 +
Viun Viun1g01737 Chr1 29150085 29152909 -
Vivi Vivi6g04394 Chr6 144436831 144440372 -
Vra Vra3g0276 Chr3 3141858 3144509 +
Pvu Pvu1g1372 Chr1 37394733 37401486 +
Acco Acco02g1125 Chr02 8191242 8197751 +
Accr Accr2g02607 Chr2 61695236 61700632 -
Aed Aed4g0447 Chr4 3285264 3291660 -
Aev Aev06g1311 Chr06 8819696 8825005 -
Alju Alju01g1109 Chr01 8555177 8560662 +
Apr Apr4g1215 Chr4 10756412 10762744 -
Bach Bach8g01152 Chr8 7686137 7691572 -
Bisa Bisa03g2370 Chr03 34899395 34904961 -
Bva Bva04g02178 Chr04 20987394 20992657 +
Cca Cca03g01952 Chr03 39432427 39438488 +
Dere Dere01g2434 Chr01 38888486 38894217 +
Dod Dod01g2246 Chr01 60177847 60183822 +
Enph Enph2g0869 Chr2 7011022 7017401 +
Glsi Glsi02g2341 Chr02 73755145 73761032 +
Gma Gma19g01316 Chr19 42416542 42423303 +
Gma Gma03g01269 Chr03 38721033 38727216 +
Gso Gso19g1164 Chr19 39950179 39956772 +
Gso Gso3g1168 Chr3 37192158 37198698 +
Lapu Lapu1g00171 Chr1 7473565 7481591 -
Lele Lele05g0864 Chr05 5289444 5294669 +
Lele Lele06g0718 Chr06 4428425 4433480 +
Lele Lele07g0905 Chr07 5360949 5366177 +
Lele Lele08g0718 Chr08 4452553 4457609 +
Lja Lja1g1297 Chr1 13531006 13537416 -
Mibi Mibi02g1013 Chr02 10009413 10014879 +
Phco Phco2g01535 Chr2 45366357 45372770 +
Prci Prci1g3282 Chr1 50447751 50453817 -
Pste Pste5g00255 Chr5 1793000 1799338 +
Seca Seca8g04850 Chr8 134621832 134627776 +
Spst Spst1g03396 Chr1 42584815 42590904 -
Ssu Ssu4g1488 Chr4 25145757 25151642 -
Sto Sto8g1312 Chr8 8279085 8284583 -
Vian Vian2g01939 Chr2 38777265 38783514 +
Vimu Vimu6g03060 Chr6 26919094 26920551 -
Viun Viun1g01742 Chr1 29196992 29203436 +
Vivi Vivi4g03618 Chr4 154532526 154537892 -
Vra Vra3g0275 Chr3 3128324 3134976 -
Pvu Pvu1g1373 Chr1 37402095 37404759 +
Apr Apr4g1214 Chr4 10731574 10735141 -
Pvu Pvu1g1374 Chr1 37421060 37422484 +
Pvu Pvu1g1375 Chr1 37444708 37445869 +
Ahy Ahy16g0414 Chr16 8004206 8007159 -
Aip Aip06g00402 Chr06 4748843 4751320 -
Amo Amo16g0228 Chr16 3420217 3422991 -
Cca Cca03g01953 Chr03 39439792 39444533 +
Gso Gso19g1165 Chr19 39962033 39966513 +
Phco Phco2g01536 Chr2 45373594 45376395 +
Pvu Pvu1g1376 Chr1 37446255 37447345 +
Ahy Ahy16g0413 Chr16 7993604 7998214 -
Ahy Ahy6g0913 Chr6 11754193 11757283 +
Aip Aip06g00400 Chr06 4724237 4737774 -
Apr Apr4g1212 Chr4 10705956 10710423 -
Car Car03g02103 Chr03 67278789 67279493 +
Cca Cca03g01954 Chr03 39465370 39470498 +
Seca Seca2g04031 Chr2 122613177 122615443 +
Vimu Vimu6g03056 Chr6 26910580 26913216 -
Viun Viun1g01743 Chr1 29205437 29208406 +
Vivi Vivi6g04396 Chr6 144455824 144458979 +
Vra Vra3g0274 Chr3 3124436 3127462 -
Pvu Pvu1g1377 Chr1 37471184 37472722 +
Ahy Ahy6g0914 Chr6 11816948 11819813 +
Gso Gso19g1166 Chr19 40034040 40037517 +
Pvu Pvu1g1378 Chr1 37472996 37473823 +
Ahy Ahy16g0411 Chr16 7976453 7980174 -
Apr Apr4g1211 Chr4 10692543 10695895 -
Vimu Vimu6g03053 Chr6 26899369 26902005 -
Vra Vra3g0273 Chr3 3114504 3117279 -
Pvu Pvu1g1379 Chr1 37479691 37486711 +
Ahy Ahy6g0916 Chr6 11829029 11832350 +
Phco Phco2g01537 Chr2 45377349 45380567 -
Pvu Pvu1g1380 Chr1 37514744 37517468 -
Aip Aip06g00398 Chr06 4707565 4710147 -
Apr Apr4g1210 Chr4 10688843 10690216 -
Tpr Tpr6g1503 Chr6 16277053 16282671 +
Seca Seca8g04850 Chr8 134621832 134627776 +
Vivi Vivi4g03618 Chr4 154532526 154537892 -