Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01954 CTCTTTTGGTCACATGGATAACAAGATACAAATACTTACGGATTTTAGATTTAAGTGATTCCTCATTTGAGACACTACCTAATTCGATTGCTAAATTGAAGCATTTGCGAGCTCTCACACTCGAAAATAATTGCAAAATAAAAAGACTTCCTGATTCTATACGCAAACTCCAAAACTTGCAACTTTTGTCACTCAGAGGATGCGTGGAGCTTGAAACATTGCCTAAAGGATTAGGCATGTTAATCAGCCTTCAACACTTGCATATAACCACAAAACAATCTATTCTTTCAGAGGATGAATTTGCAAGCTTGTGCAGTCTCCAATCTTTGATTTTTGAATATTGTGACAATTTGAAGTTTTTGTTCAGATGGGCACAACTTACATCCCTTCAAGTTTTGCATGTTCAATCGTGTGGGAGCCTTGAGTCCTTACCTCTTCATATTCTCCCTAAACTGGAAGTTCTGCTTGTAATAAGGTGCGAGATGCTAAATCTGTCGTGGAACTATGAAAGCCAAATCCAAAGATTGAGGATGAAATTTCTGCATGTCGAGAATTGTCCAAGGCAACAAAGATTGCCTCACTGGATTGAAGGAGCCACTGATACTTTGCAGACATTGTTAATTTTAAATTGTGATAGTCTTAAGTTGCTTCCTGAGTGGCTGACAAGAATGAGTCATCTTAAGATGCTCCACATTGTTAACTGTCCTCAACTGTTGTTTCTCCCAAGTGGCATGCATCGACTCACTGCCCTTGAAGATTTGAGCATAGATGGTTTACTGGTCCTTCATCTCTCACATCAAACGCTTTTCCATTGGAGAAACAAGAGAAGAGAAACTTCTTTTTCGAATGCGGTCGCAGCTGCGGTTGAGATTGCGCAATTA 881 0.3939 LLVTWITRYKYLRILDLSDSSFETLPNSIAKLKHLRALTLENNCKIKRLPDSIRKLQNLQLLSLRGCVELETLPKGLGMLISLQHLHITTKQSILSEDEFASLCSLQSLIFEYCDNLKFLFRWAQLTSLQVLHVQSCGSLESLPLHILPKLEVLLVIRCEMLNLSWNYESQIQRLRMKFLHVENCPRQQRLPHWIEGATDTLQTLLILNCDSLKLLPEWLTRMSHLKMLHIVNCPQLLFLPSGMHRLTALEDLSIDGLLVLHLSHQTLFHWRNKRRETSFSNAVAAAVEIAQL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01954 293 Gene3D Ribonuclease Inhibitor 1 282 IPR032675 -
Cca03g01954 293 Pfam Leucine rich repeat 11 67 IPR001611 GO:0005515
Cca03g01954 293 SUPERFAMILY L domain-like 6 268 - -
Cca03g01954 293 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 98 258 - -
Cca03g01954 293 PANTHER - 6 164 - -
Cca03g01954 293 PANTHER - 98 258 - -
Cca03g01954 293 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 6 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01954 Cca-Chr3 39465370 39470498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01954 12 89 Miscellaneous Gene Families AT4G39270 36.709 1.55e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01954 - - gmx:100812584 392.504