LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02336	ATGGCGTGCAATGGCGGCGGCGGCGGCGGCTGTCAATCTGGTTGCTACAAAGATGAAGAAACGACACGCGACCAACCAACTGCCTCTTCAGAGACCGATTCAGGGAGCTCTAGCAATCTCTGCCTCAAGTGCAAGCTAAACGTCGTCGTTTCGGGTTACGGCGGAATCGACGACGGTCGTTTCTGCGCCGATTGCTTCCGGAGCAACTTGTTCGGGAAGTTTCGACTTGCTGTCACTTCAAACGCTATGATCTCTCCCACTGATAAGGTCCTTGTTGCCTTCTCCGGTGGCCCTTCTTCCAGGGTAGCTTTGCAATTTGTGCATGACATGCAAGAGAGGGCTCATAAGAACTTTGAAGCTAGTAGAGATAGGTCATTACCTGTATTTGGTGTTGGGGTTGTGTTTATTGATGAGAGTGTTGTTTTTCCGATTCCTTCTCGGGAAATGGAAGAGGCGGTTGAAGCTGTTAGTTTGATTGTGTCGAGTTTAGCCCCGCCGAGGAAGGAGTTTCATTTTGTTCCGATTGAGATTGTTTACTCGTCGGATTCTAGTGATGGAAAGGAGAGGTTAATTGAGTTGATGAATGTAGTGAGTGATCCCACTGGTAGGGAGGATATGTTGCTTTCTCTGCGAATGTTGGCCTTGCAAAAGGTGGCTTCTGAATTTGGGTACAACAGGATTGTTCTAGGCTCATGCGTTTCAAGGATTGCTGCTCATGTCATTTCAGCTACTGTGAAGGGGCAAGGATATTCGTTACCTGCTGATATCCAGTATGTTGATGCTAGATGGGAAATTCCAGTCGTGCTTCCTCTGCGTGATTGTTTTGTTCAAGAGATCAACATGTTTTGCCGTCTCGACAGTCTAAAGACTATTAAAATGTCTACAGGTCCGAGTTCTAGCATTAATAGTCTGGTCTCATCTTTTGTGGCTTTATTGCAGGAAGAGAACCCATCTCGAGAGAGCACAATTGTAAGAACAGCCGGGAAACTTATCCCCTTTCAATTCAACAGGATTCCCGAGATCATTGATGGTAATGTTCCATTGGCAACTCGAAGACGGCAAAAGAGATACAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCCCTCTGCAATAGTCCACTTGACAAAAGTGAGATTGTTGATTGGAGCAATCACAAAAACTGCAGAAGTAGCGACACTTTTTATACTTCTTGCTGTTCAAGTTGTCAATTTCAGATACTTCCACCAGATTCAACACCAATGGAGAAATTTTATATGGATTTACCACATTCAGTGGTTGCCCGGTCAAACAAGGTCAACAATGTTAAATTGAATGCACTGAGGGAACAGATACAAGATTGCTTGCTTTCAGATGGTGAAGATGAAACTTAA	1383	0.4469	MACNGGGGGGCQSGCYKDEETTRDQPTASSETDSGSSSNLCLKCKLNVVVSGYGGIDDGRFCADCFRSNLFGKFRLAVTSNAMISPTDKVLVAFSGGPSSRVALQFVHDMQERAHKNFEASRDRSLPVFGVGVVFIDESVVFPIPSREMEEAVEAVSLIVSSLAPPRKEFHFVPIEIVYSSDSSDGKERLIELMNVVSDPTGREDMLLSLRMLALQKVASEFGYNRIVLGSCVSRIAAHVISATVKGQGYSLPADIQYVDARWEIPVVLPLRDCFVQEINMFCRLDSLKTIKMSTGPSSSINSLVSSFVALLQEENPSRESTIVRTAGKLIPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEIVDWSNHKNCRSSDTFYTSCCSSCQFQILPPDSTPMEKFYMDLPHSVVARSNKVNNVKLNALREQIQDCLLSDGEDET	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g02336	460	Hamap	Cytoplasmic tRNA 2-thiolation protein 2 [CTU2].	31	414	IPR019407	GO:0000049\|GO:0002098\|GO:0034227
	Vifa5g02336	460	PANTHER	CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2	36	449	IPR019407	GO:0000049\|GO:0002098\|GO:0034227
	Vifa5g02336	460	FunFam	Cytoplasmic tRNA 2-thiolation protein 2	40	406	-	-
	Vifa5g02336	460	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	64	291	-	-
	Vifa5g02336	460	Gene3D	HUPs	40	406	IPR014729	-
	Vifa5g02336	460	Pfam	Cytoplasmic tRNA 2-thiolation protein 2	300	393	IPR019407	GO:0000049\|GO:0002098\|GO:0034227

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g02336	K14169		-	gmx:100804325	743.036

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g02336	5	767431472	767435053	Vifa5g02336	5	767431472	767435053	ECH