Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03056 ATGGCGGAATATTTTGTCTTCGAGATTGCTGAATCAATGCTGGGGAAGCTTGCATCTAATCTTTATGAACAAGTTTCTCGAGCCTTTGATCTGTATGAGGATGTGCAAAGTTTCAGAGATACCTTGTCAATTGTAAAAGGCGTGCTGTTGGATGCTGAGGAGAAGAAGGAGAAGAAGCATGGGTTGCGTGAATGGCTCAGGCAGATTCAAAACGTATGCTTAGATGCTGAAGATGTTTTGGATGGATTTGAGTGCCAAAACCTCAGAAAACAAGTTCTCAAAGCTTCCGGCACCACCAGGACGAAGGTAAACCACTTCTTTTCTTCATCTAATTCTCTTGTTTTCCGTTTTAGGATGGCTAGGCAAATAAAAAATGTTACACGTAGATTGGATAAGATAGCAGCTGATGGGAACAAGTTTGGTCTTGAGAGGATTGTTATTGATCAAAGTCCTCTGCGAAGGAGAGAAATGACTTATTCCCATGTTGATGCTTCGGGGATGATTGGAAGGGAGAGTGATAGGGAACAGATTATCAAGCTTTTGATACAACCTCACCCTAATGGTGATGGTTATGGAGATCAAAGTGTTTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGAAAGACCACACTTGCAAAGTTGGTGTTCAATGATAACAGAATAGATCATCTTTTCCAGCTGAAGATGTGGGTGTGTATCTCTGACGACTTTAACATAAGACAGATAATTATTAAAATCATCAACTCTGCTACTGATCCAACCATATCTGTGGTTCCTCAAGAAAGCATGAACAACTTAGGTATTGAGCAGTTACAAAGTCGTCTTAGACACAAACTTTCTTGTCAGAAGTATCTACTAGTCTTGGATGACGTATGGAATGATGATCGAGCAAAATGGATAGAGTTGAAAGATTTAATTAAAGTGGGTGCAATAGGAAGCAAAATCTTGGTGACAACACGAAGTACCTCAATTGCTTCAATGATGGGCACTGTTCCCTCGTATGTTTTAGAAGGTCTTTCGGTGGAGAACTGCTTATCTCTGTTTCTGAAATGGGCATTTAGGGAAGGTGAAGAAAAAGAACATCCAAATCTAGTGGATATAGGAAAAGAAATAGTGAAAAAGTGCCGAGGGGTTCCACTAGCAGTGAAAACTTTAGGAAGTTCCCTGTTCTCAGTTTTTGATTCACAAAGATGGGAAATTATGAGAGACCATGAGCTATGGAACCTGAAACAACAGAAAGATGACATTTTACCTTCCCTAAAGTTGAGCTATGATCAAATGCCATCCTATTTGAGGCACTGTTTTGCTTTCTTTTCTCTTTATCCCAAAGATTTTGGCTTTACCAGTGCTGAAATGGCTAACTTTTGGGCCACGCTTGGATTACTTCGATCTCCATTTGGAAGTCAAAAGATAGAGAATATTGGAAAAGCATATATTAATGAGTTATATTCAAGGTCATTTTTGGAAGACTTTGAGGACTTTGGCACAATTTATTATTTTAAACTACATGATTTGGTACATGATCTTTCCCTGTATGTTGCGAAAGAAGAGTTTCTAATGGTGAACTCAAATAGTCGCAATATACCAGAGCAAGTAAGGCATATATCAGTTGTTGAAAATGATTCACTAAGCCATAGTTTGTTTCCCAAGTCCAGTGGTGTGAGAACTATAATATTTCCCGTTAATGGAGTGGGTGTTGGCAGTGAATCTCTTTTGGAAACATGGATAGAAAGATACAGGTACTTACTACATTTAGATTTAAGTAATTCATCTTTTGAGAAACTTCCTAATTCAATTGCTAAATTGGAGCATCTGCGAGCTCTCAGCCTTGACAACAATTCCAAAATAAAAAGGCTTCCTAATTCTATTTGCAGACTCCAAAACTTACAAATGTTGTCTTTAAGAAGATGCTTGGGGCTTGAAACATTGCCTAAACGATTAGGGATGTTAATCAGCCTCCGAAAATTGTATATAACCACAAAGCAGTCTGTTTTGTCAGAGGATGAATTTGCAAGTTTGAACAATCTTCATACTCTGATTTTTGAATACTGTGACAATTTGAAATTTTTGTTCCGAGGGGCACAGACACAACTCTCGTCCCTTGAGGTTTTGATCATTCAATCATGTGGGAGCCTAGAGTCCTTACCTCTTCATATTCTCCCTAAACTTGAGGTTCTGATTGTAACAAGGTGCGTCATGCTAAATCTGTCCTTTAACAGTGAAAGACCAATCCAAAAATTGAAGATGAAATATTTGCATATTGAGCATTGTGCACGGCAACACACGCTGCCTGAATGGATTCAAGCAGCCTCCAACACTTTGAGAACATTGTTAATTTTAAATTGTCATTGTCTTGAGATGCTTCCCGAGTGGCTTAGCACAATGAAACATCTTAAGATGCTCCATATTGTTAACTGTCCTCAGTTGTTTCATCTGCCATGTGACATGCATTGTCTAAGAGCCCTAGAAGACTTGGTCATAGATGGTTGTCCTGAATTGGGTAGAAAATTTGAACCTCATTCTGGTGAGCACTGGTCCTTCATCGCTCACATCAAATGTGTTTCTATTGGAGAAACAAGAAAAAGGAAACTCCTTTTTCAAATGCTTTCACGACTGGGCTTGAACTGCACTTAG 2637 0.3898 MAEYFVFEIAESMLGKLASNLYEQVSRAFDLYEDVQSFRDTLSIVKGVLLDAEEKKEKKHGLREWLRQIQNVCLDAEDVLDGFECQNLRKQVLKASGTTRTKVNHFFSSSNSLVFRFRMARQIKNVTRRLDKIAADGNKFGLERIVIDQSPLRRREMTYSHVDASGMIGRESDREQIIKLLIQPHPNGDGYGDQSVCVIPIVGIGGLGKTTLAKLVFNDNRIDHLFQLKMWVCISDDFNIRQIIIKIINSATDPTISVVPQESMNNLGIEQLQSRLRHKLSCQKYLLVLDDVWNDDRAKWIELKDLIKVGAIGSKILVTTRSTSIASMMGTVPSYVLEGLSVENCLSLFLKWAFREGEEKEHPNLVDIGKEIVKKCRGVPLAVKTLGSSLFSVFDSQRWEIMRDHELWNLKQQKDDILPSLKLSYDQMPSYLRHCFAFFSLYPKDFGFTSAEMANFWATLGLLRSPFGSQKIENIGKAYINELYSRSFLEDFEDFGTIYYFKLHDLVHDLSLYVAKEEFLMVNSNSRNIPEQVRHISVVENDSLSHSLFPKSSGVRTIIFPVNGVGVGSESLLETWIERYRYLLHLDLSNSSFEKLPNSIAKLEHLRALSLDNNSKIKRLPNSICRLQNLQMLSLRRCLGLETLPKRLGMLISLRKLYITTKQSVLSEDEFASLNNLHTLIFEYCDNLKFLFRGAQTQLSSLEVLIIQSCGSLESLPLHILPKLEVLIVTRCVMLNLSFNSERPIQKLKMKYLHIEHCARQHTLPEWIQAASNTLRTLLILNCHCLEMLPEWLSTMKHLKMLHIVNCPQLFHLPCDMHCLRALEDLVIDGCPELGRKFEPHSGEHWSFIAHIKCVSIGETRKRKLLFQMLSRLGLNCT 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03056 878 Pfam NB-ARC domain 194 426 IPR002182 GO:0043531
Vimu6g03056 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 438 IPR027417 -
Vimu6g03056 878 Gene3D - 339 424 IPR042197 -
Vimu6g03056 878 Gene3D - 155 334 IPR027417 -
Vimu6g03056 878 SUPERFAMILY L domain-like 502 857 - -
Vimu6g03056 878 Gene3D - 10 124 - -
Vimu6g03056 878 PANTHER DISEASE RESISTANCE PROTEIN RP 63 816 IPR044974 GO:0006952
Vimu6g03056 878 Pfam Rx N-terminal domain 11 100 IPR041118 -
Vimu6g03056 878 PRINTS Disease resistance protein signature 376 390 - -
Vimu6g03056 878 PRINTS Disease resistance protein signature 198 213 - -
Vimu6g03056 878 PRINTS Disease resistance protein signature 697 713 - -
Vimu6g03056 878 PRINTS Disease resistance protein signature 279 293 - -
Vimu6g03056 878 Gene3D - 425 512 IPR036388 -
Vimu6g03056 878 Gene3D Ribonuclease Inhibitor 518 867 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03056 Vimu-Chr6 26910580 26913216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03056 572 689 Receptor kinase-like Gene Family AT3G11080 33.613 1.36e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03056 - - gmx:100794422 1317.37