Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1381 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1382 . . . . . . Ahy6g0919 . . Amo16g0221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr6g1504 . Tsu07g03351 . . . . . .
Pvu1g1383 . . . . . . . Aip06g00397 . . . Apr4g1209 . . . . . Cca03g01956 . . . . . . . . . . . . . . . . . . . . . Mal3g3519 . . . . . . . . Pste5g00270 . . . . . . Tpr6g1505 . Tsu07g03353 Vian2g01941 . . . . .
Pvu1g1384 . . . . . Ahy16g0410 . Aip06g00392 . Amo16g0219 . . . . . . . Cca03g01957 . . . . . . . . . . . . . . Lapu1g00170 . . . . . Lja1g1296 Mal3g3520 . . . Mtr7g2640 . . . . . . . . . . . Tpr6g1506 . Tsu07g03354 . . Vimu6g03051 . . Vra3g0272
Pvu1g1385 . . Adu06g00891 . . . . . . . . . Arst6g01185 . . . Car03g02105 . . . . . . . Gso19g1167 Gso3g1169 . . . Lan9g0305 . . . . . . . . . . . . . . Phac1g01843 Phco2g01539 . Psa3g1694 Pste5g00271 . . . Spst1g03392 . . . . . . . Vimu6g03046 . Vivi6g04397 .
Pvu1g1386 Acco02g1131 Accr2g02604 . Aed4g0446 Aev06g1310 . . . Alju01g1113 . . Apr4g1208 Arst6g01186 . Bisa03g2366 . . Cca03g01959 Dere01g2438 Dod01g2248 Enph2g0872 Glsi02g2345 Gma19g01319 Gma03g01270 . . . . . . . . Lapu1g00168 . Lele05g0868 . Lele07g0908 Lele08g0722 Lja1g1294 Mal3g3521 Mepo3g02859 Mesa25g01308 Mibi02g1017 Mtr7g2642 . . Prci1g3279 . . Pumo5g02574 Rops8g02819 Seca2g04032 Spst1g03391 Ssu4g1486 Sto8g1309 Tpr6g1507 Trre13g03420 Tsu07g03355 Vian2g01943 Vifa5g02340 . Viun1g01750 Vivi6g04398 Vra3g0271
Pvu1g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa3g02773 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1388 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1389 . . Adu06g00893 . . Ahy16g0409 . . . Amo16g0217 . . . . . . . . . . . . . . . Gso3g1170 . . . . . . . . . . . . . . . . . . . Phco2g01541 . . . . . . . . . . . . . . . . . .
Pvu1g1390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1381 Chr1 37516904 37517239 +
Pvu Pvu1g1382 Chr1 37534317 37536950 +
Ahy Ahy6g0919 Chr6 11880282 11883099 +
Amo Amo16g0221 Chr16 3338232 3340304 -
Tpr Tpr6g1504 Chr6 16284639 16287867 +
Tsu Tsu07g03351 Chr07 39975855 39980681 +
Pvu Pvu1g1383 Chr1 37550181 37551878 +
Aip Aip06g00397 Chr06 4693961 4696549 -
Apr Apr4g1209 Chr4 10687920 10691512 -
Cca Cca03g01956 Chr03 39477237 39480200 +
Mal Mal3g3519 Chr3 112367255 112369864 +
Pste Pste5g00270 Chr5 1872957 1875553 +
Tpr Tpr6g1505 Chr6 16291019 16294602 +
Tsu Tsu07g03353 Chr07 39984263 39986913 +
Vian Vian2g01941 Chr2 38818030 38825201 -
Pvu Pvu1g1384 Chr1 37552036 37554060 +
Ahy Ahy16g0410 Chr16 7969991 7973053 -
Aip Aip06g00392 Chr06 4588733 4591318 -
Amo Amo16g0219 Chr16 3322905 3324597 -
Cca Cca03g01957 Chr03 39490202 39492922 +
Lapu Lapu1g00170 Chr1 7450133 7452307 +
Lja Lja1g1296 Chr1 13499086 13501642 -
Mal Mal3g3520 Chr3 112372085 112374079 -
Mtr Mtr7g2640 Chr7 43082919 43086357 +
Tpr Tpr6g1506 Chr6 16302060 16306348 +
Tsu Tsu07g03354 Chr07 39988986 39993321 +
Vimu Vimu6g03051 Chr6 26890826 26893450 -
Vra Vra3g0272 Chr3 3103199 3106181 +
Pvu Pvu1g1385 Chr1 37628437 37629163 -
Adu Adu06g00891 Chr06 10913786 10923728 -
Arst Arst6g01185 Chr6 10944112 10954061 -
Car Car03g02105 Chr03 67283950 67300723 -
Gso Gso19g1167 Chr19 40039347 40056129 -
Gso Gso3g1169 Chr3 37205894 37220113 -
Lan Lan9g0305 Chr9 4104602 4118750 +
Phac Phac1g01843 Chr1 28139133 28142771 -
Phco Phco2g01539 Chr2 45417330 45455723 -
Psa Psa3g1694 Chr3 150849494 150873453 +
Pste Pste5g00271 Chr5 1875737 1902184 -
Spst Spst1g03392 Chr1 42553820 42560512 +
Vimu Vimu6g03046 Chr6 26846777 26873592 +
Vivi Vivi6g04397 Chr6 144459362 144474808 -
Pvu Pvu1g1386 Chr1 37632633 37656119 -
Acco Acco02g1131 Chr02 8231142 8242289 -
Accr Accr2g02604 Chr2 61663280 61684888 +
Aed Aed4g0446 Chr4 3238352 3253621 +
Aev Aev06g1310 Chr06 8807455 8819009 +
Alju Alju01g1113 Chr01 8569811 8580268 -
Apr Apr4g1208 Chr4 10658411 10684258 +
Arst Arst6g01186 Chr6 10944112 10950380 -
Bisa Bisa03g2366 Chr03 34800016 34861652 +
Cca Cca03g01959 Chr03 39504340 39523625 -
Dere Dere01g2438 Chr01 38904469 38918953 -
Dod Dod01g2248 Chr01 60195303 60215482 -
Enph Enph2g0872 Chr2 7027674 7051811 -
Glsi Glsi02g2345 Chr02 73773474 73797130 -
Gma Gma19g01319 Chr19 42470280 42487757 -
Gma Gma03g01270 Chr03 38741589 38756466 -
Lapu Lapu1g00168 Chr1 7385064 7414089 +
Lele Lele05g0868 Chr05 5310567 5325875 -
Lele Lele07g0908 Chr07 5376167 5391205 -
Lele Lele08g0722 Chr08 4467037 4479656 -
Lja Lja1g1294 Chr1 13467157 13481444 +
Mal Mal3g3521 Chr3 112375549 112390520 -
Mepo Mepo3g02859 Chr3 38665018 38683068 -
Mesa Mesa25g01308 Chr25 15947302 15964508 +
Mibi Mibi02g1017 Chr02 10024982 10035774 -
Mtr Mtr7g2642 Chr7 43096236 43113484 -
Prci Prci1g3279 Chr1 50423815 50434266 +
Pumo Pumo5g02574 Chr5 70831977 70847645 -
Rops Rops8g02819 Chr8 63512643 63541143 -
Seca Seca2g04032 Chr2 122619560 122638352 -
Spst Spst1g03391 Chr1 42527598 42528964 +
Ssu Ssu4g1486 Chr4 24887462 24915237 +
Sto Sto8g1309 Chr8 8263448 8270623 +
Tpr Tpr6g1507 Chr6 16307453 16324320 -
Trre Trre13g03420 Chr13 41864762 41879089 -
Tsu Tsu07g03355 Chr07 39995306 40010557 -
Vian Vian2g01943 Chr2 38835792 38854853 -
Vifa Vifa5g02340 Chr5 767471758 767488086 -
Viun Viun1g01750 Chr1 29264432 29284639 -
Vivi Vivi6g04398 Chr6 144459362 144474808 -
Vra Vra3g0271 Chr3 3067967 3095118 +
Pvu Pvu1g1387 Chr1 37668518 37669295 -
Lasa Lasa3g02773 Chr3 590475571 590476368 -
Pvu Pvu1g1388 Chr1 37669667 37670060 -
Pvu Pvu1g1389 Chr1 37691162 37693789 -
Adu Adu06g00893 Chr06 10951088 10953464 +
Ahy Ahy16g0409 Chr16 7913985 7916883 -
Amo Amo16g0217 Chr16 3310727 3313309 -
Gso Gso3g1170 Chr3 37226989 37230026 +
Phco Phco2g01541 Chr2 45579736 45580433 -
Pvu Pvu1g1390 Chr1 37710827 37712874 -