Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01952 ATGGCTTCTTTAGTATCTTCACCATCCACTCTACCAAATTCTAAACCTGACCAGCTTCATTCTCTTGCCCAAAAGCATCTTTTTCTTCATTCTTTCCTTCCCAAGAAGGCCAGTTACTGTGGTAGCTCAAAATCCTCTTTAAGAGTGAAATGTGCTGCCATTGGCAATGGTCTATTCACCCAAACCACCCAAGAAGTCCGAAGAATAGTTCCAGAGAATGAACAAAACTTGCCAACAGTTAAAATTGTATACGTGGTCCTTGAGGCTCAGTACCAATCATCTCTCACTGCTGCAGTCATAGCTCTCAACAGTAACAATAAACATGCTTCCTTTGAGGTTGTGGGTTACTTGGTTGAGGAGCTTCGAGACGTGTCAACTTATGAGATTTTCTGCAAGGACTTGGAGGATGCTAACATCTTCATTGGGTCATTGATCTTTGTGGAGGAGCTTGCCCTCAAGATCAAGGCTGCAGTGGAGAAAGAAAGGGACAGGCTTGATGCAGTTTTGGTGTTTCCATCAATGCCTGAAGTGATGAGGCTTAACAAATTGGGTTCTTTCAGCATGTCACAGCTTGGGCAATCCAAGAGTCCCTTTTTCCAGCTGTTCAAGAGAAAGAAGCCTCAGTCTGCTGGCTTTGCTGACAGCATGTTGAAGCTTGTGAGGACATTGCCAAAGGTTTTGAAGTATTTGCCAAGTGATAAGGCTCAGGATGCTAGGCTCTATATACTGAGTCTGCAGTTTTGGCTTGGGGGTTCCCCTGATAACTTACAGAATTTCCTCAAGATGATTTCTGGATCTTATGTTCCGGCGTTGAAAGGGACGAAAATCGAGTATTCGGAGCCGGTTTTGTACTTGGACAATGGAATTTGGCACCCTTTGGCTCCTTGTATGTATGATGATGTGAAGGAGTATTTGAATTGGTATGGAACTAGAAGGGATGCAAATGAGAAGCTGAAGAGTCCTAATGCCCCTATCATTGGATTGGTTTTGCAAAGGAGTCATATTGTGACCGGTGATGAAGGACACTATGTGGCTGTGATCATGGAGCTAGAGGCTAGAGGGGCTAAGGTCATTCCCATTTTTGCTGGTGGACTTGACTTTTCAGGGCCAGTGGAGAAGTTCTTCATTGATCCAATTACTAAGAAACCATTTGTGAATTCTGTGGTATCCCTCACTGGCTTTGCTCTTGTTGGAGGCCCTGCAAGGCAGGACCATCCGAGGGCGGTCGAGGCTTTGAGGAGACTTGATGTTCCTTACATTGTTGCCCTGCCACTGGTGTTCCAGACAACAGAAGAATGGCTCAACAGTACTCTTGGTTTACATCCAATTCAGGTCGCTCTTCAAGTTGCACTGCCAGAGCTAGATGGAGGCATGGAGCCAATTGTTTTTGCTGGTCGAGATCCCAAAACAGGAAAGTCTCATGCTCTTCACAAGAGAGTGGAACAGCTCTGCATCAGGGCAATCAGATGGGCTGAATTGAAAAGAAAATCGAAGACTGACAAGAAACTAGCAATCACTGTCTTCAGTTTCCCTCCAGACAAAGGAAATGTTGGAACTGCTGCCTATCTCAATGTCTTCTCCTCCATATACTCAGTTATGAAAGAACTGAAAAGAGATGGTTACAACGTTGAAGGCCTTCCGGAGACTCCGGAAGCTTTGATTGAAGATGTGATTCATGACAAAGAAGCTCAATTCAGCAGCCCAAATCTTAACATTGCTTACAAAATGAGTGTCCGTGAGTACCAAAATCTGACTCCATATGCCTCAGCATTGGAAGAGAATTGGGGAAAACCCCCTGGAAATCTGAACGCAGATGGAGAGAACCTATTGGTATATGGGAAACAGTATGGTAATGTCTTCATAGGTGTTCAGCCTACGTTTGGCTATGAAGGGGATCCAATGAGGCTTCTTTTCTCCAAATCTGCCAGCCCTCATCATGGATTTGCAGCATATTACTCCTTTGTTGAGAAAATCTTCAAAGCTGATGCTGTACTTCATTTTGGGACACATGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTGGGGATGAGTGATGTATGTTACCCTGACAGTCTGATTGGGAATATTCCAAATGTATATTACTATGCTGCAAACAACCCTTCGGAGGCTACTGTAGCCAAACGCCGGAGCTATGCAAACACCATTAGCTATCTGACTCCTCCAGCAGAAAACGCTGGACTATACAAGGGTCTTAAGCAGTTAAGTGAGCTCATCTCCTCATACCAGTCCCTCAAAGACAGTGGCCGTGCAGCACAAATTGTGAGTTCTATTATCAGCACAGCTAAACAATGTAATCTTGACAAGGATGTGACACTTCCAGATGAGGGTGAGGAGATCCCTCCTAAAGAGCGGGACCTTGTGGTTGGAAAGGTGTATTCCAAGATCATGGAGATTGAGTCCCGCCTGTTGCCTTGTGGGCTTCATGTCATTGGTGAGCCTCCCTCAGCCATGGAAGCAGTTGCTACACTGGTCAACATTGCTGCCCTTGATCGTCCTGAAGATGGCATTTCTTCTCTTCCAGCAATATTAGCTGACACTGTTGGAAGAGATATGGAAGATGTGTATAGAGGAAGTGACAAAGGAATATTGAAGGATGTAGAACTTCTCAGGCAAATAACCGAGGCATCACGTGGAGCAGTCACTGCCTTTGTAGAGCGCACTACCAATAATAAGGGTCAAGTTGTTGATGTAGCTGACAAGCTTAGCGCAATCCTTGGATTTGGCATAAATGAGCCATGGATTCAATACTTGTCAAACACCAAATTTTACAGAGCTGATAGGGAAAAACTTAGAACCTTGTTTATGTTCCTGGGAGAATGTTTGAAGTTAATTGTGGCAGATAATGAGTTGGGAAGTTTAAAACAAGCCTTGGAGGGTAAATATGTGGAGCCGGGGCCTGGTGGTGACCCAATAAGAAATCCAAAAGTTTTGCCAACAGGCAAGAATATTCATGCCCTGGACCCACAATCTATTCCTACAACTGCTGCAATGCAGAGTGCCAAAATAGTGGTAGAAAGGTTGATTGAGAGGCAGAAAGCTGAGAATGGGGGGAAATATCCAGAGACAATTGCACTTGTGTTGTGGGGAACTGATAATATTAAAACATATGGTGAATCCCTGGCTCAAGTCTTGTGGATGATTGGTGTGACACCAGTGGCTGATACCTTTGGTAGGGTAAACCGGGTGGAACCTGTAAGTCTTGAAGAGCTTGGGAGGCCGAGGATTGATGTCGTTGTTAATTGCTCAGGAGTGTTTAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCTGAATTAGATGAACCAGCAGAGCAAAACTATGTGAGAAAGCATGCATTGGAGCAAGCTCAAGCCCTTGGAATTGAAGTTCGAGAGGCAGCAACAAGGGTCTTCTCCAATGCCTCTGGATCCTATTCCTCAAATATAAACCTGGCTGTGGAGAATTCCACATGGAATGATGAGAAGCAGCTCCAGGACATGTATCTTAGCAGAAAGTCCTTTGCTTTTGATTGTGATACCCCTGGTGCAGGTATGACTGAAAAAAGAAAAGTCTTTGAGATGGCTCTAAGCACCGCGGATGCCACATTCCAAAACCTTGATTCGTCAGAAATTTCCCTCACCGATGTAAGCCATTACTTTGACTCCGATCCGACTAATCTGGTTCAAAATCTAAGGAAAGATGGAAAGAAGCCTAGTGCATACATTGCTGATACAACCACAGCCAATGCTCAGGTTCGTACACTTTCTGAGACAGTTAGACTTGATGCAAGAACCAAGCTGTTGAACCCAAAGTGGTACGAAGGCATGTTGTCTACTGGATACGAGGGTGTTCGTGAGATTGAGAAGAGACTCACCAATACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAACTGGGTGTATGAAGAAGCCAACACAACTTTCATTCAAGATGAGCAAATGCTGAACAAGCTCATGAACACTAATCCAAACTCCTTTAGGAAGCTGGTGCAGACATTCTTGGAAGCCAATGGACGTGGTTATTGGGAAACTTCAGAAGATAATATTGAGAGGCTCAGGCAGTTGTATTCAGAAGTGGAAGACAAAATTGAAGGCATTGATCGCTGA 4152 0.4458 MASLVSSPSTLPNSKPDQLHSLAQKHLFLHSFLPKKASYCGSSKSSLRVKCAAIGNGLFTQTTQEVRRIVPENEQNLPTVKIVYVVLEAQYQSSLTAAVIALNSNNKHASFEVVGYLVEELRDVSTYEIFCKDLEDANIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKPQSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKIEYSEPVLYLDNGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSPNAPIIGLVLQRSHIVTGDEGHYVAVIMELEARGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVVSLTGFALVGGPARQDHPRAVEALRRLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCIRAIRWAELKRKSKTDKKLAITVFSFPPDKGNVGTAAYLNVFSSIYSVMKELKRDGYNVEGLPETPEALIEDVIHDKEAQFSSPNLNIAYKMSVREYQNLTPYASALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATVAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDSGRAAQIVSSIISTAKQCNLDKDVTLPDEGEEIPPKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSAMEAVATLVNIAALDRPEDGISSLPAILADTVGRDMEDVYRGSDKGILKDVELLRQITEASRGAVTAFVERTTNNKGQVVDVADKLSAILGFGINEPWIQYLSNTKFYRADREKLRTLFMFLGECLKLIVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTAAMQSAKIVVERLIERQKAENGGKYPETIALVLWGTDNIKTYGESLAQVLWMIGVTPVADTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEQNYVRKHALEQAQALGIEVREAATRVFSNASGSYSSNINLAVENSTWNDEKQLQDMYLSRKSFAFDCDTPGAGMTEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEQMLNKLMNTNPNSFRKLVQTFLEANGRGYWETSEDNIERLRQLYSEVEDKIEGIDR 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01952 1383 PANTHER MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC 83 1382 - -
Cca03g01952 1383 Coils Coil 1357 1383 - -
Cca03g01952 1383 TIGRFAM BchH: magnesium chelatase, H subunit 81 1381 IPR011771 GO:0015995|GO:0016851
Cca03g01952 1383 CDD CobN_like 156 1254 IPR003672 GO:0009058
Cca03g01952 1383 Pfam Domain of unknown function (DUF3479) 81 242 IPR022571 GO:0016851
Cca03g01952 1383 PANTHER MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC 83 1382 IPR003672 GO:0009058
Cca03g01952 1383 Pfam CobN/Magnesium Chelatase 246 1363 IPR003672 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01952 Cca-Chr3 39432427 39438488 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01952 K03403 - gmx:100787735 2662.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01952 03 39432427 39438488 Cca03g01952 03 39432427 39438488 ECH
Cca03g01952 03 39432427 39438488 Cca02g00398 02 8387357 8393639 PCT