Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1166 ATGGCCGAATCTTTTGTCTTTGATATTGCTGAATCACTGCTGGGGAAACTTGCTTCTTATGCTTATGAAGAGGCTTCTCGAGCCTACGGTGTGTATGAGGATCTGAAGGGGATCAAAGACACATTGTCAATTGTGAAAGGGGTGCTGTTGGATGCTGAGGAGAAGAAGGAGCACAAGCATGGGTTGCGCGAATGGCTCAGGCAGATTCAAAATGTTTGCTTCGATGCTGAAGATGTGTTGGATGAATTTGAGTGCCAAGGCTCGCAAAAGCAAGTTGTTAAAGCTTCAGGCAGCGTCAGGGTGAAGGTAGGCCACTTCTTTTCTTCATCTAATTCGCTTGTTTTCCGTCTTAGGATGGCTCATCAAATTAAAGATGTTAGGGAAAGATTAGATAAGATAGCAGCAGATGGGAATAAGTTTGGTCTTGAGAAGATTGAGGTTGACCTCAGGCTTGTGCAAAGGAGAGAAATGACTTATTCCCATGTGGATGCTTCAGATGTGATTGGAAGGGAGACTGATAAGGAAGAAATTATCAAGCTCTTGATGCAACCCCACCCTGATGGTGATGGGTATGGTGATAGAAGTCTGTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGATGGATGAACTTTTCCAATTGAAGATGTGGGTTTGTATCTCTGATGAATTTGACATTAGGCAGATTATTATTAAAATCATCAATTCTGCTTCAGCTTCAGCTCCAAATATTGCTCTTGCTTACCAAGAAAACATCAACAGCTTAGATATTGAGCAGCTTCAAACTCGTCTTAGACACAAGCTTTCTCTTCAGAAATTTTTACTGGTCTTGGATGATATATGGAATGATGATTATACAAAATGGATTGACTTGAAAAATTTAATAAAAGTTGGTGCAGTGGGAAGCAAAATCATAGTGACAACGCGAAGTAACTCCATTGCTTCAATGATGGGCACTATTCCCTCTTATGTTTTAGAGGGCCTTTCTCCAGAGAATTGTATATCGCTGTTTGTGAGATGGGCATTTAAGGAAGGTCAAGAGAAGGAATATCCAAATCTAATGGAGATCGGAAAGGAAATTGTGAAAAAATGCAAAGGGGTTCCTTTGGCAGTGAGAAGCTTGGGAAGTTCTCTGTTCTCAACTTCTGATTTAGATAAGTGGGAATTTGTGAGAGACCATGAGATATGGAATTTAGAACAAAAGAGAAATGACATTTTACCAGCACTTAAGTTGAGCTATGATCAAATGCCATCCCATTTGAGGCACTGTTTTGCTTATTTTGCCCTTTTTCCCAAAGATTTTCGCTTTATAAATACTGAAATTACCAATCTTTGGGCGTCACTTGGACTACTACAATCCCCAAATGGAAGTCAAAAGGTAGAGAAAATTGCAAGACAATATATAGAAGAGTTGCATTCAAGATCATTTCTCCAGGATATCACAGATTTTGGCCCCTTCTATTTTTTCAACGTACACGATTTGGTGCATGATCTTGCCCTGTATGTTGCGAAGGAGGAGTATCTGATGGTAGATGCTTGTACACGGAATATACCTGAGCATGTAAGGCACATATCAATTGTTGAAAATGGTTTACCTGACCATGCCGTGTTCCCCAAATCCAGAAGTCTGAGAACAATTACTTTTCCCATTGAAGGAGTGGGTCTTGCCAGTGAAATTATTTTGAAGACATGGGTATCAAGATACAGATACTTACGGGTCTTAGATTTAAGTGATTCTTCTTTTGAGACTCTTCCTAATTCAATTGCTAAATTGGGGCATTTGCGAGTTCTCGACCTTTCCAATAATGGCAAAATCAAAAGACTTCCTAATTCTATTTGCAAACTCCAGAATTTGCAAGTTTTTTCAGTCAGTGGATGCATGGAGCTTAAAGCATTGCCTAAAGGAATCGGGATGTTGATTAACCTTCGAGAGCTGAAAATAACCACAAAGCAATCTTCTCTGTCACAGGATGAATTTGCAAACTTGAGCAATCTTCAAACCTTGAGTTTTGAATATTGTGTCAATTTGAAATTTTTGTTGGAAAAGGCACAACTCACTCAACTCAGTTCCCTTCAAATATTGGTTGTTAGATCATGTGGGAGCCTAATGTCCTTACCCCTTTATATTCTCCCTAAACTAGACGCTCTGTTTGTTGCAGACTGTGGGATGATAAATTTGTTTTTGGGTGATGAAAGCCCAATCAAAAGATGGAGGATGAAATTTCTGCATGTAGAGAATTTTCCGTGGCTACAAGTACTTCCTGAATGGATCGAAGGAGCTGCGGATACTTTACAGACATTGATGATTTATAATTTGCCTAAACTTAAGTTTCTTCCTGAGTGTTTACCTAGAATGACTCATCTTAAGAGGCTCCATGTTGCAGAATGTCCTTCACTGCTCTTTCATCCAAGTCACATCCATTGCCTCACTACCCTAGAAGATTTGAGCGTAGATGGTTGTCCTGCATGGGACTGGGAGTACATGGCAAGTCGTAGTTTACCTGACAACACCATGAAGTAA 2562 0.4005 MAESFVFDIAESLLGKLASYAYEEASRAYGVYEDLKGIKDTLSIVKGVLLDAEEKKEHKHGLREWLRQIQNVCFDAEDVLDEFECQGSQKQVVKASGSVRVKVGHFFSSSNSLVFRLRMAHQIKDVRERLDKIAADGNKFGLEKIEVDLRLVQRREMTYSHVDASDVIGRETDKEEIIKLLMQPHPDGDGYGDRSLCVIPIVGIGGLGKTTLAKLVFNDKRMDELFQLKMWVCISDEFDIRQIIIKIINSASASAPNIALAYQENINSLDIEQLQTRLRHKLSLQKFLLVLDDIWNDDYTKWIDLKNLIKVGAVGSKIIVTTRSNSIASMMGTIPSYVLEGLSPENCISLFVRWAFKEGQEKEYPNLMEIGKEIVKKCKGVPLAVRSLGSSLFSTSDLDKWEFVRDHEIWNLEQKRNDILPALKLSYDQMPSHLRHCFAYFALFPKDFRFINTEITNLWASLGLLQSPNGSQKVEKIARQYIEELHSRSFLQDITDFGPFYFFNVHDLVHDLALYVAKEEYLMVDACTRNIPEHVRHISIVENGLPDHAVFPKSRSLRTITFPIEGVGLASEIILKTWVSRYRYLRVLDLSDSSFETLPNSIAKLGHLRVLDLSNNGKIKRLPNSICKLQNLQVFSVSGCMELKALPKGIGMLINLRELKITTKQSSLSQDEFANLSNLQTLSFEYCVNLKFLLEKAQLTQLSSLQILVVRSCGSLMSLPLYILPKLDALFVADCGMINLFLGDESPIKRWRMKFLHVENFPWLQVLPEWIEGAADTLQTLMIYNLPKLKFLPECLPRMTHLKRLHVAECPSLLFHPSHIHCLTTLEDLSVDGCPAWDWEYMASRSLPDNTMK* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1166 853 Pfam Leucine rich repeat 584 640 IPR001611 GO:0005515
Gso19g1166 853 CDD RX-CC_like 2 134 IPR038005 -
Gso19g1166 853 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 789 - -
Gso19g1166 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 440 IPR027417 -
Gso19g1166 853 ProSiteProfiles Leucine-rich repeat profile. 607 629 IPR001611 GO:0005515
Gso19g1166 853 Gene3D - 426 515 IPR036388 -
Gso19g1166 853 Gene3D Ribonuclease Inhibitor 549 851 IPR032675 -
Gso19g1166 853 Gene3D - 150 335 IPR027417 -
Gso19g1166 853 Gene3D - 341 425 IPR042197 -
Gso19g1166 853 PRINTS Disease resistance protein signature 198 213 - -
Gso19g1166 853 PRINTS Disease resistance protein signature 281 295 - -
Gso19g1166 853 PRINTS Disease resistance protein signature 378 392 - -
Gso19g1166 853 PRINTS Disease resistance protein signature 603 619 - -
Gso19g1166 853 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gso19g1166 853 SUPERFAMILY L domain-like 505 838 - -
Gso19g1166 853 Pfam NB-ARC domain 171 428 IPR002182 GO:0043531
Gso19g1166 853 Gene3D - 10 124 - -
Gso19g1166 853 PANTHER DISEASE RESISTANCE PROTEIN RP 6 789 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1166 Gso-Chr19 40034040 40037517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1166 585 783 Miscellaneous Gene Families AT4G39270 29.952 4.44e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1166 - - gmx:100796004 1683.31