Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03405 ATGGCGTGCAACGGCGCCGGCGGATGTCAATCCGATTGCTACAAAGACGAAGAAACCACATCCGACCAACAAACTGCGCCTTCAGAAACCGATTCAAAGAGCTCTAGCAATCTCTGCATCAAGTGCAAGCTAAACGATGTCGTTTCCGGTTATGGCGGAATCGACGACGGTCGTTTCTGTGCCGATTGCTTCAGAAGCAACTTGTTTGGAAAGTTTCGTCTCGCCGTTACTTCAAACGCTATGATCTCTCCCACCGATAAGGTCCTCGTTGCCTTCTCCGGTGGCCCTTCTTCCAGGGTAGCTTTGCAATTTGTGCATGATTTGCAAGAAAGGGCTTATAAGAATTTTGAAGCTAGTAGAGATAGGTCATTGCCTGTGTTTGGTGTTGGAGTTGTGTTTATTGACGAGAGTTCTGTTTTGCCGATTCCGTCTCATGAAATGGAAGAGGCAGTTGAAGTTATTAATTTGATTGTGTCGAGTTTAGCCCCGCCGAGAAAGGAGTTGCATTTTGTTCCTATTGAGACAGTTTACTCGTCGGATTGTAGTGATGGAAAGGAGAGGTTAATTGAGTTGATGAATGTAGTGAGTGATCCTACTGGAAGGGAGGATATGTTGCTTTCTCTGCGCATGTTGGCCTTGCAAAAGGTAGCTTCTGAATTTGGGTATAACAGGATTGTTCTAGGCTCGTGCATTTCAAGGATTGCTTCTCATGTCATTTCAGCCACTGTGAAGGGTCAAGGATATTCGTTACCTGCTGATATACAGTATGTTGACGCTAGATGGGAAATTCCTGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAAGAGATCAACATGTTTTGCCGTCTTGACAGTCTAAAGACTATTAAGCTGTCTACAGGTCCGAGTTCTAGCATTAATAGCTTGGTCTCATCTTTTGTGACTTTATTGCAGGAAGAGAACCCATCTCGAGAGAGCACAATTGTAAGAACAGCCGGGAAACTTATTCCCTTTCATTTCAACAGGATTCCCGAGATCATTGATGGTAATGTTCCATTGGCAACTCGAAGACGCCAAAAGAGATATAATCTCAAATCCAATGAATCTGTTTCTTCAGAGTCTTTCTGTCCTCTCTGCAATAGCCCGCTTGACAAAAGTGAGATGGTTGATTGGAGCAATCACAATAACTGCAGAAGTAGCGAGACTTTTTACACTTCTTGCTGTTCAAGTTGCCAGTTTCAGATACTTCCACCAGATTCCACATCGATGGAGAAATTTTACACTGACTTACCTCATTCAGTGGTTACCCGGGCAAACCAAGTCAACAATGGTAAATTGAATGCACTAAGGGAACAAATACAAGATTGCTTGCTTTCAGATGGTGAAGATGAAACTTAA 1377 0.4365 MACNGAGGCQSDCYKDEETTSDQQTAPSETDSKSSSNLCIKCKLNDVVSGYGGIDDGRFCADCFRSNLFGKFRLAVTSNAMISPTDKVLVAFSGGPSSRVALQFVHDLQERAYKNFEASRDRSLPVFGVGVVFIDESSVLPIPSHEMEEAVEVINLIVSSLAPPRKELHFVPIETVYSSDCSDGKERLIELMNVVSDPTGREDMLLSLRMLALQKVASEFGYNRIVLGSCISRIASHVISATVKGQGYSLPADIQYVDARWEIPVVLPLRDCFAQEINMFCRLDSLKTIKLSTGPSSSINSLVSSFVTLLQEENPSRESTIVRTAGKLIPFHFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEMVDWSNHNNCRSSETFYTSCCSSCQFQILPPDSTSMEKFYTDLPHSVVTRANQVNNGKLNALREQIQDCLLSDGEDET 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03405 458 Hamap Cytoplasmic tRNA 2-thiolation protein 2 [CTU2]. 33 412 IPR019407 GO:0000049|GO:0002098|GO:0034227
Trre13g03405 458 Pfam Cytoplasmic tRNA 2-thiolation protein 2 298 394 IPR019407 GO:0000049|GO:0002098|GO:0034227
Trre13g03405 458 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 289 - -
Trre13g03405 458 Gene3D HUPs 38 407 IPR014729 -
Trre13g03405 458 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 34 447 IPR019407 GO:0000049|GO:0002098|GO:0034227
Trre13g03405 458 FunFam Cytoplasmic tRNA 2-thiolation protein 2 38 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03405 Trre-Chr13 41662895 41667751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03405 K14169 - gmx:100804325 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03405 13 41662895 41667751 Trre13g03405 13 41662895 41667751 ECH