Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1489 ATGGCGTGCAATGGCTCCGGGTGCCAGTCCGGTTGCTACAAAGACGAAGACGCAACACGTAACCAACCAACAAAGTCCGAAGAAACCGATTCAAGGAGCCCTAGCAATGTGTGCATCAAGTGCAAGCTGAACGACGCCGTTTCCGGCTACGGCGGAATCGACGACGGGCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACGTCAAACGCCATGATCACTCCCACCGACAATGTCATCGTTGCCTTCTCCGGTGGTCCTTCCTCCAGGGTAGCTTTGCAATTTGTGCATGACATGCAAGAGAGGGCTCAGAAGAACTTTGATGCGAGTAGGGATAGGTCGTTGCCGGTGTTTGGTGTTGGGGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAAGTTATTAGTGAGGTTGTGTCGAGTTTAGCCCCGCCGAAGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTACTCCTCGGATTCTGGTGATGGGAAGGAGAGGCTAATGAAGGTAGTGAACGTGGTGAGTGATCCGACTGGAAGGGAGGATATGTTGCTTTGTCTGCGAATGTTGGCGCTGCAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTAGGGTCATGCATTTCAAGGATTGCTTGCCATGTAATTTCAGCCACTGTGAAGGGTCAAGGATATTCATTACCTGCAGATATACAATATGTTGATGCTAGATGGGAAGTTCCTGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAAGAGATCAACATGTTTTGCCGCCTTGACAGTCTAAAGACTTTAAAGTTGTCTACAGGTCCATGCTCTAGCATTAATGGCTTGGTCTCATCGTTTGTGACTTTATTGCAGGAAGAAAACCCATCTCGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAAAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTGTTGATCGGAGTAATCTTGATAGCCACAGAAGTagtgacattttttatattacctgCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCACATCAATGGAACAATTTTATATGGATTTCCCTCAATCAGTGGTTGGCCGAGCAAAGCAAGCCGACAATGGTAATTTGAGTCTGCTAAGGGAACAAATACAAGATTGCCTGCTTTCAGATGGTGAAGATGAAACATAG 1374 0.4549 MACNGSGCQSGCYKDEDATRNQPTKSEETDSRSPSNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDNVIVAFSGGPSSRVALQFVHDMQERAQKNFDASRDRSLPVFGVGVVFIDESAVLPIPSNEMEEAVEVISEVVSSLAPPKKELHIVPIETVYSSDSGDGKERLMKVVNVVSDPTGREDMLLCLRMLALQKVASEFGYNRIILGSCISRIACHVISATVKGQGYSLPADIQYVDARWEVPVVLPLRDCFAQEINMFCRLDSLKTLKLSTGPCSSINGLVSSFVTLLQEENPSRESTIVRTAGKLTPFQFNRIPKIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEIVDRSNLDSHRSSDIFYITCCSSCRFQILPSDSTSMEQFYMDFPQSVVGRAKQADNGNLSLLREQIQDCLLSDGEDET 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1489 457 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 23 451 IPR019407 GO:0000049|GO:0002098|GO:0034227
Ssu4g1489 457 MobiDBLite consensus disorder prediction 14 35 - -
Ssu4g1489 457 Gene3D HUPs 37 394 IPR014729 -
Ssu4g1489 457 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 287 - -
Ssu4g1489 457 Pfam Cytoplasmic tRNA 2-thiolation protein 2 297 388 IPR019407 GO:0000049|GO:0002098|GO:0034227
Ssu4g1489 457 Hamap Cytoplasmic tRNA 2-thiolation protein 2 [CTU2]. 32 411 IPR019407 GO:0000049|GO:0002098|GO:0034227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1489 K14169 - gmx:100804325 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1489 4 25168757 25173783 Ssu4g1489 4 25168757 25173783 ECH