Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04396 ATGGCCGAATCATTTGTGTTTGATATTGCTGATTCACTGCTTGGAAAACTTGCTTCTTATATTTGTGAAGAAGCTGCTCAAGCTTATGGTGTTTATGAAGATCTCCAAGGGATCAAAGACACTCTATCCATTGTGAGAGGTCTTCTCTTGGATGCTGAGGACAAGAAGGACCATAAACATGGGTTACGTGAATGGCTGAGGCAGCTTCATAACATCTGCTCTGACGCTGAAGATGTATTGGATGGATTTGAGTTGCAACACAAGAAAAAGCAAGTTGTGGAAGCTTCTGGAAGTACAAAGATGAAGGTACGCCACTTCTTTTCTTCCTCTAATCCAGTTGTTTTCCGTCCTAAGATGGCGCATCTACTCAAAAGAATAAGAGATAGATTGTATAAGGTAGCATCTGATGGGAACAAGTTTGGTCTTGCAACAATAAGTATTGATCATGGACTTGTTGTTCCAAGGAGAGAAACCACTCATTCCTATATTGATGCTTTGGATGTTATAGGAAGGGAGAACGATAGGGAAGAAATTATCAAGCTTTTAATGCAACCTCATCCTCGAGGTGACGGTGATGGTGATCAAAGTTTGTGTGTTATTCCCATAGTGGGAATTGGAGGATTGGGGAAGACCACACTTGCTAAGTTGGTATTCAATGATAAGAGAATGGATGAACTTTTCCAATTGAAGATATGGGTGTGTGTCTCTAATGATTTTGACATCAGGCAGCTAATAATAAAAGTCATTAACTCAGCTTATGCTTCAGCTTCAGTTCCTACGGCCGCGGCTATTGCTCCCCAAGAAAATATTAACAACTTTGATATTGAGCAACTACAAATACGTCTTCGATATAAGCTTTCTCGTCAAAAGTTTTTGCTTGTATTGGATGATATATGGAATGAAGATCGTGCAGAATGGATTAAATTCAAAGACTTAATAAAAGTTGGTGCACCAGGAAGCAAAATCATAGCAACAACTCGTAGTAGCTCAATTGCTTCAATGATGAGTACGTTACCCTCTTATGTCTTAGGAGGTCTTTCTCAAGAGAATTGTTTATCTCTTTTTGTCAAATGGGCATTTAAAGATGGTGAAGAAGAAAAATATCCAAATTTAGTTGAGATCGGAAAAGAAGTTGTGAAAAAATGCAAAGGGGTTCCACTAGCCGTGACAACGCTAGGAAGTTCTTTGTTCTCAAAATATGATTTAAATAAGTGGAGATTTGTTAGAGACTCAGAGTTATGGAATTTAAAACAAAACAAAAATGAAATTTTACCTGCACTTAAATTAAGCTATGATCAAATGCCATTTAATTTGAGGCATTGTTTCACATACTTTTCACTTTATCCAAAAGATTTTGGCTTCACTAGTGTTCAAATCACTAAACTCTGGGTAGCACTGGGATTAATACAATCACAAGATGGAAATCAAAGTCTCGAGAGTATTGCAAGAGATTATATCGATGAACTACATTCAAGGTCGTTTCTTCAAGATTTTGAGGACTTTGGGCACTTCTACTATTTCAAAGTACATGATTTGGTGCATGATCTTGCATTGTATGTTGCGAAAGATGAGTGTGTAGCAGTTGACTCGCATACTCGGAATATATCTCAGCAAGTAAGGCATTTCTCAATTGTTGATAATGGTTCACTTGACAGTGCTTTATTCCCCAAATCCAAAAGTGTGAGAACTGTATTATTTCCTATTGGAGGAGTTGGTCTTGAAAGTGAATCAATGTTGGATACATGGATATCAAGATACAAATACTTACGGATTTTAGATTTAAGTGATTCTTCGTTCCATAAGCTACCTGATTCAATTTCAAAATTGGAGCATCTGTGTGTTCTTAACCTTTCTAATAATTGCAAAATCACACGACTTCCCTATTCTATTTGTAAACTCCAAAGTTTGCAAGTTTTGTCACTCAGTGGTTGCTTGAAGCTTGAAAAACTACCTACAGAATTAGGAAAGCTGATCAACCTTCGACAACTGTACATAACTACAAAACAGTCTGTTATTCCGCATAATATATTTGCAAACTTGACTAATCTTCAAACTTTAAGTTTTGAATATTGTGACTCTCTGGAGTTCTTGTTCAATGGAGTGCAATTCACTTCTCTTGAAACATTGATAGTTCGTTGCTGCGGAAGATTAAAATCCTTACCTTTTTATATTCTCCCTAAACTGGAGGCTCTGTTAGTCATTGGTTGTGAGAATTTAGACCTCAGTCTATCAGAGAATCACACTCTTGAAAATCCAATGGAAAGATGGAGAATGACTTTTCTTTATCTTGAGAATGAATGCCTATGGACCTTGCCTGAATGGATTGAAGGTGTGGTAGAGACTTTACAGACCTTGATAATTATAAATCTTCCTATGCTTCAGAGGCTTCCCGAGTGTTTGGCAAGAATGGCTCATCTTAAAATGCTCTATATTGCCGAATGTATTGTACTGGCTCATTTCCCAGTTGGAATAAAACACCTAACTTCCCTTGTAGCTTTGACCATACACAATTGTCCTATATTGGGTGGAGAATGCCATCCACATTCTGGTCAGTACTGGCCCGTGATTTCTCACATCAAACGTGTTTCCATTGGATTAGGAACCTCATGA 2610 0.3751 MAESFVFDIADSLLGKLASYICEEAAQAYGVYEDLQGIKDTLSIVRGLLLDAEDKKDHKHGLREWLRQLHNICSDAEDVLDGFELQHKKKQVVEASGSTKMKVRHFFSSSNPVVFRPKMAHLLKRIRDRLYKVASDGNKFGLATISIDHGLVVPRRETTHSYIDALDVIGRENDREEIIKLLMQPHPRGDGDGDQSLCVIPIVGIGGLGKTTLAKLVFNDKRMDELFQLKIWVCVSNDFDIRQLIIKVINSAYASASVPTAAAIAPQENINNFDIEQLQIRLRYKLSRQKFLLVLDDIWNEDRAEWIKFKDLIKVGAPGSKIIATTRSSSIASMMSTLPSYVLGGLSQENCLSLFVKWAFKDGEEEKYPNLVEIGKEVVKKCKGVPLAVTTLGSSLFSKYDLNKWRFVRDSELWNLKQNKNEILPALKLSYDQMPFNLRHCFTYFSLYPKDFGFTSVQITKLWVALGLIQSQDGNQSLESIARDYIDELHSRSFLQDFEDFGHFYYFKVHDLVHDLALYVAKDECVAVDSHTRNISQQVRHFSIVDNGSLDSALFPKSKSVRTVLFPIGGVGLESESMLDTWISRYKYLRILDLSDSSFHKLPDSISKLEHLCVLNLSNNCKITRLPYSICKLQSLQVLSLSGCLKLEKLPTELGKLINLRQLYITTKQSVIPHNIFANLTNLQTLSFEYCDSLEFLFNGVQFTSLETLIVRCCGRLKSLPFYILPKLEALLVIGCENLDLSLSENHTLENPMERWRMTFLYLENECLWTLPEWIEGVVETLQTLIIINLPMLQRLPECLARMAHLKMLYIAECIVLAHFPVGIKHLTSLVALTIHNCPILGGECHPHSGQYWPVISHIKRVSIGLGTS 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04396 869 Pfam Rx N-terminal domain 12 98 IPR041118 -
Vivi6g04396 869 Gene3D - 155 341 IPR027417 -
Vivi6g04396 869 Pfam NB-ARC domain 193 432 IPR002182 GO:0043531
Vivi6g04396 869 Gene3D - 430 519 IPR036388 -
Vivi6g04396 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 444 IPR027417 -
Vivi6g04396 869 Gene3D Ribonuclease Inhibitor 557 756 IPR032675 -
Vivi6g04396 869 Gene3D Ribonuclease Inhibitor 757 849 IPR032675 -
Vivi6g04396 869 SUPERFAMILY L domain-like 508 858 - -
Vivi6g04396 869 Pfam Leucine rich repeat 588 644 IPR001611 GO:0005515
Vivi6g04396 869 PANTHER DISEASE RESISTANCE PROTEIN RP 55 838 IPR044974 GO:0006952
Vivi6g04396 869 CDD RX-CC_like 2 135 IPR038005 -
Vivi6g04396 869 Gene3D - 345 429 IPR042197 -
Vivi6g04396 869 FunFam Probable disease resistance protein At1g63360 431 519 - -
Vivi6g04396 869 Gene3D - 10 124 - -
Vivi6g04396 869 PRINTS Disease resistance protein signature 285 299 - -
Vivi6g04396 869 PRINTS Disease resistance protein signature 382 396 - -
Vivi6g04396 869 PRINTS Disease resistance protein signature 631 647 - -
Vivi6g04396 869 PRINTS Disease resistance protein signature 199 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04396 Vivi-Chr6 144455824 144458979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04396 588 660 Receptor kinase-like Gene Family AT2G15300 47.297 1.89e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04396 - - gmx:100812584 1146.72