Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal4g0714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0096 . . . . . . . . Aev08g2406 . Ahy18g2943 . Aip08g03343 . . . . . Apr1g0303 . . . . . . . . . . . . . . . Dod09g0131 . . . . . . Gma04g01906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g4321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0097 . . . . . . Aed10g0796 . . . . . . . . . . . . . . . . . . . Bva06g01516 . . . Cca03g00317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2384 . Sto4g0131 . . . . . . . . . . . . . . . . . Vra5g0658 .
Vvi17g0098 . . . . . Adu08g02797 . Aed5g2249 . . . . . . . . . . . Apr2g1167 . Arst3g03759 . Bach2g02269 . . . Bva05g00237 . Car05g02637 . Cca09g02398 . . . . . . . . Gma06g01503 Gma08g00110 Gma05g02003 . . . . . . . . Lal17g0839 . . . . . . . . . Lapu9g00981 . Lasa5g03544 . . . . . . . . . . Mal7g4888 Mal2g1335 . Mepo3g06987 . Mesa9g04531 . . Mtr8g3420 Mtr3g3502 . Phac9g02748 . Phco7g01954 . . . . . Pste2g00302 . . Pte3g00157 . . Pumo10g01866 . Pvu9g1707 . Rops10g00823 . Seca4g01727 . Spst9g02138 . Ssu5g3012 . . Tpr3g0681 Tpr3g3319 . Trre5g04674 Tsu02g00502 Tsu07g01141 . Vian4g00968 . Vifa2g03427 . Vimu10g01437 . . . Vivi3g02184 . Vra7g3472
Vvi17g0099 . . . . . . . . . . . . . . . . . . . . . Arst3g03760 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g03554 . Lasa7g04677 . . . . . . . . . Lja4g0454 . . . Mepo2g04574 . . . . . . . . . Phco4g03250 . . . Psa7g0838 . Pste3g01138 . . . . . Pumo6g00532 . Pvu2g2947 . . . Seca12g06437 . Spst3g01137 . . . . . . . . . . . Vian1g03795 . Vifa6g03454 . . . Viun3g00623 . Vivi5g05787 . .
Vvi17g0100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0101 . . . . Adu01g01731 . . . Aev01g1865 . Ahy11g1620 . Aip01g01767 . . . Amo11g1774 . . . Arst1g02258 . . . . . . . . . . . . . Dod05g1464 . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g01257 . . . . . . . . . . . . . Mal5g3946 . Mepo1g01528 . . . . . Mtr4g3667 . . . Phco8g00684 . . . . . Pste6g01685 . Pte14g01233 Pte12g00108 . . . . Pvu3g2202 . . . . . Spst3g04390 . . . . . Tpr5g2719 . . . Tsu04g02472 . . . . . Vimu7g00479 . . . . . . .
Vvi17g0102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g00557 . . . . . . . . . . . . . . . . . . . . Lal14g1452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g0834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Arst Arst3g03759 Chr3 105846282 105850031 -
Mal Mal7g4888 Chr7 117479774 117484784 +
Mtr Mtr8g3420 Chr8 44783251 44789245 +
Pte Pte3g00157 Chr3 1534877 1538824 +
Tpr Tpr3g0681 Chr3 6566485 6572663 -
Tsu Tsu02g00502 Chr02 4202799 4209616 -
Vifa Vifa2g03427 Chr2 990224886 990231758 +
Arst Arst3g03760 Chr3 105912049 105912895 +
Lapu Lapu3g03554 Chr3 58994937 58995146 -
Lasa Lasa7g04677 Chr7 679174978 679175187 -
Lja Lja4g0454 Chr4 3695848 3696459 +
Mepo Mepo2g04574 Chr2 54195255 54195627 -
Phco Phco4g03250 Chr4 53166438 53166647 -
Pste Pste3g01138 Chr3 7295436 7295645 -
Pumo Pumo6g00532 Chr6 6652479 6653144 +
Pvu Pvu2g2947 Chr2 45001349 45002087 -
Seca Seca12g06437 Chr12 156455193 156455402 -
Spst Spst3g01137 Chr3 14682714 14682923 +
Vian Vian1g03795 Chr1 61007784 61007993 -
Vifa Vifa6g03454 Chr6 1139794678 1139820395 +
Viun Viun3g00623 Chr3 3821651 3822200 +
Vivi Vivi5g05787 Chr5 161765595 161766203 -
Mal Mal5g3946 Chr5 108975631 109001401 -
Mtr Mtr4g3667 Chr4 50447964 50455552 -
Tpr Tpr5g2719 Chr5 49361991 49368331 -
Tsu Tsu04g02472 Chr04 27922357 27936039 -
Vvi Vvi17g0093 Chr17 819000 821660 -
Vvi Vvi17g0094 Chr17 823973 825326 -
Vvi Vvi17g0095 Chr17 839381 840529 -
Lal Lal4g0714 Chr4 5838688 5845668 +
Vvi Vvi17g0096 Chr17 842004 844122 +
Aev Aev08g2406 Chr08 23074711 23076395 +
Ahy Ahy18g2943 Chr18 134470942 134473797 -
Aip Aip08g03343 Chr08 124694374 124696751 -
Apr Apr1g0303 Chr1 3547189 3551028 +
Dod Dod09g0131 Chr09 2034620 2038158 -
Gma Gma04g01906 Chr04 49328311 49332721 +
Lja Lja1g4321 Chr1 55759848 55762646 +
Vvi Vvi17g0097 Chr17 845805 847577 -
Aed Aed10g0796 Chr10 6606503 6610955 +
Bva Bva06g01516 Chr06 10925627 10928407 -
Cca Cca03g00317 Chr03 5015014 5018029 +
Ssu Ssu1g2384 Chr1 66347645 66349904 -
Sto Sto4g0131 Chr4 1030214 1031389 -
Vra Vra5g0658 Chr5 10339495 10342611 +
Vvi Vvi17g0098 Chr17 851469 859341 -
Adu Adu08g02797 Chr08 44557711 44562970 +
Aed Aed5g2249 Chr5 24417797 24422823 +
Apr Apr2g1167 Chr2 17911431 17916122 +
Arst Arst3g03759 Chr3 105846282 105850031 -
Bach Bach2g02269 Chr2 29326299 29330947 -
Bva Bva05g00237 Chr05 1159778 1165211 +
Car Car05g02637 Chr05 71390392 71397349 +
Cca Cca09g02398 Chr09 49367183 49373678 +
Gma Gma06g01503 Chr06 14474127 14475957 +
Gma Gma08g00110 Chr08 958741 964074 +
Gma Gma05g02003 Chr05 41395529 41400948 +
Lal Lal17g0839 Chr17 6285043 6291298 +
Lapu Lapu9g00981 Chr9 15428055 15433700 +
Lasa Lasa5g03544 Chr5 574159395 574166434 +
Mal Mal7g4888 Chr7 117479774 117484784 +
Mal Mal2g1335 Chr2 16069361 16077114 -
Mepo Mepo3g06987 Chr3 83505271 83513282 +
Mesa Mesa9g04531 Chr9 78997172 79004986 +
Mtr Mtr8g3420 Chr8 44783251 44789245 +
Mtr Mtr3g3502 Chr3 48879626 48887633 +
Phac Phac9g02748 Chr9 26398252 26403773 +
Phco Phco7g01954 Chr7 32732006 32736851 +
Pste Pste2g00302 Chr2 2209083 2215646 -
Pte Pte3g00157 Chr3 1534877 1538824 +
Pumo Pumo10g01866 Chr10 24674269 24680615 +
Pvu Pvu9g1707 Chr9 24160133 24165319 +
Rops Rops10g00823 Chr10 18859903 18868177 -
Seca Seca4g01727 Chr4 27963275 27971851 -
Spst Spst9g02138 Chr9 45869478 45874218 -
Ssu Ssu5g3012 Chr5 77344083 77349674 +
Tpr Tpr3g0681 Chr3 6566485 6572663 -
Tpr Tpr3g3319 Chr3 36621877 36628598 +
Trre Trre5g04674 Chr5 48711070 48716140 -
Tsu Tsu02g00502 Chr02 4202799 4209616 -
Tsu Tsu07g01141 Chr07 9697579 9704047 -
Vian Vian4g00968 Chr4 14274320 14284647 -
Vifa Vifa2g03427 Chr2 990224886 990231758 +
Vimu Vimu10g01437 Chr10 15319265 15324135 -
Vivi Vivi3g02184 Chr3 36054471 36061578 -
Vra Vra7g3472 Chr7 54087147 54094518 +
Vvi Vvi17g0099 Chr17 868087 868577 +
Arst Arst3g03760 Chr3 105912049 105912895 +
Lapu Lapu3g03554 Chr3 58994937 58995146 -
Lasa Lasa7g04677 Chr7 679174978 679175187 -
Lja Lja4g0454 Chr4 3695848 3696459 +
Mepo Mepo2g04574 Chr2 54195255 54195627 -
Phco Phco4g03250 Chr4 53166438 53166647 -
Psa Psa7g0838 Chr7 60799861 60800070 +
Pste Pste3g01138 Chr3 7295436 7295645 -
Pumo Pumo6g00532 Chr6 6652479 6653144 +
Pvu Pvu2g2947 Chr2 45001349 45002087 -
Seca Seca12g06437 Chr12 156455193 156455402 -
Spst Spst3g01137 Chr3 14682714 14682923 +
Vian Vian1g03795 Chr1 61007784 61007993 -
Vifa Vifa6g03454 Chr6 1139794678 1139820395 +
Viun Viun3g00623 Chr3 3821651 3822200 +
Vivi Vivi5g05787 Chr5 161765595 161766203 -
Vvi Vvi17g0100 Chr17 874005 874697 -
Vvi Vvi17g0101 Chr17 878193 880629 +
Adu Adu01g01731 Chr01 60600081 60606910 -
Aev Aev01g1865 Chr01 23624405 23634859 -
Ahy Ahy11g1620 Chr11 83734617 83745061 +
Aip Aip01g01767 Chr01 77401086 77412970 +
Amo Amo11g1774 Chr11 83907167 83917285 +
Arst Arst1g02258 Chr1 61257891 61264343 -
Dod Dod05g1464 Chr05 39286284 39305765 -
Lapu Lapu3g01257 Chr3 13603860 13622393 +
Mal Mal5g3946 Chr5 108975631 109001401 -
Mepo Mepo1g01528 Chr1 15046565 15055095 +
Mtr Mtr4g3667 Chr4 50447964 50455552 -
Phco Phco8g00684 Chr8 6876966 6894133 +
Pste Pste6g01685 Chr6 7476055 7477887 -
Pte Pte14g01233 Chr14 33584776 33590224 -
Pte Pte12g00108 Chr12 909474 912504 +
Pvu Pvu3g2202 Chr3 42909872 42918665 +
Spst Spst3g04390 Chr3 95511841 95522428 -
Tpr Tpr5g2719 Chr5 49361991 49368331 -
Tsu Tsu04g02472 Chr04 27922357 27936039 -
Vimu Vimu7g00479 Chr7 5055773 5064192 -
Vvi Vvi17g0102 Chr17 885314 891203 +
Car Car06g00557 Chr06 5608418 5611963 +
Lal Lal14g1452 Chr14 15651181 15654574 -
Psa Psa7g0834 Chr7 60616394 60620921 -